Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2970 ATGCCCGAAAACTCGATCCCGAAGGAGGCTGCGTTCCAGATCATAAACGATGAGCTGATGCTGGATGGGAACCCGCGGCTGAATCTGGCGTCCTTCGTCACCACGTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCTCCATTAACAAGAACTACGTCGATATGGATGAATATCCCGTCACTACAGAGCTCCAGAATCGGTGTGTGAACATGATAGCTCATTTGTTCAATGCGCCATTGGGTGATTCTGAGACGGCTGTGGGGGTTGGGACAGTGGGATCCTCAGAGGCCATAATGCTGGCTGGTTTGGCTTTCAAGAGAAAATGGCAGAACAGAAGAAAGGGTGAAGTCAAGCCCTATGACAAACCCAACATTGTCACTGGAGCCAACGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTGAAGGAGGTGAAACTGAGGGAAGGTTACTATGTGATGGATCCAGAAAAGGCTGTGGAGTTGGTGGATGAGAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTAAACGATCTCTTGCTCGAGAAGAACAAGGAAACCGGATGGGACACTCCTATTCATGTGGATGCTGCGAGTGGAGGGTTCATTGCTCCTTTCATTTACCCTGAGCTAGAATGGGACTTCAGGCTTCCCCTTGTGAAGAGCATTAATGTGAGTGGCCATAAGTATGGGCTTGTCTATGCTGGAATTGGTTGGGTCATCTGGAGAAACAAGGAAGATTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGGGCTGACCAACCCACTTTCACCCTTAATTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTACTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAGAGAAAACATGTTGGTTCTCAAGGAAGGGCTCGAGAAAACTGGGCGTTTCAACATTGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACTCGCCACAATGAGTTCGAAGTCTCAGAAATGCTGCGGCGATTTGGCTGGATTGTGCCTGCTTACACCATGCCTCCAGACGCACAGCACATCACAGTTCTCAGAGTTGTCATTAGAGAAGATTTCTCTCGCACACTTGCCGAGCGTCTAGTGCACGACATTGAAAAGACGTTGCACGATCTCGAAAGCCTCCCGTCGAAGGCCGATGTCATGACTACAGTGGCTGGAGAAGAGACGCAGCACAACAACATCGTCGTGGCGAAGAAGAGCGCGCTCGAAAAGCAGAGGGAGATCACGAATGTTTGGAGGAAGTTTGTTATGGAGAAGAAGAAGACTAATGGAGTTTGTTAG 1407 48.4 MPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKGEVKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLLEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCRENMLVLKEGLEKTGRFNIVSKDNGVPLVAFSLKDNTRHNEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVHDIEKTLHDLESLPSKADVMTTVAGEETQHNNIVVAKKSALEKQREITNVWRKFVMEKKKTNGVC 468
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 26932498 26943816 + Sed0004429.2 Sed01g2970 702274
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2970 468 NCBIfam glutamate decarboxylase 1 413 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Sed01g2970 468 Gene3D - 35 329 IPR015421 -
Sed01g2970 468 Gene3D - 330 417 - -
Sed01g2970 468 FunFam Glutamate decarboxylase 330 417 - -
Sed01g2970 468 FunFam Glutamate decarboxylase 35 329 - -
Sed01g2970 468 PANTHER GLUTAMATE DECARBOXYLASE 1 468 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Sed01g2970 468 SUPERFAMILY PLP-dependent transferases 1 414 IPR015424 -
Sed01g2970 468 CDD DOPA_deC_like 28 408 - -
Sed01g2970 468 Pfam Pyridoxal-dependent decarboxylase conserved domain 2 350 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Sed01g2970 468 Gene3D - 1 34 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2970 Sed-Chr1:26932498 Sed03g0897 Sed-Chr3:5565001 1.60E-265 dispersed
Sed01g2969 Sed-Chr1:26932498 Sed01g2970 Sed-Chr1:26932498 1.90E-278 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2970 K01580 - csv:101216119 916.376