Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2974 ATGGAGAACCAACCTGAACAGGTTCTTGAGAAGACAACTAGCGATGATGTCGCTCTCACATCGGCCACGGATGATCCAAAAGTCACCATTTCGGATCCTGATCATGCTGCTGCTGCTGTTGACAGGGAAGTCGATGTGAAATCTCGAGAAAATTTGGAGGATAATCAAGATCCCGAAAAGGGAAAAGAAGAAAAGGAGGAGGAGGGGGAAAAGAAGGAAGAAGACGTGGAAGAGTCAAAGGATGAACCGGATCATCAATACAATCTCGAGACGATTCTTGAAGAAGTCGATCAATTTTTATCGACTCACAAGCAATCTGCTGGGGAGATTCCGGAGTTCATCCACAAGTTCATGGATCTGATAGATGCTAAAATTGAGCAATACAAAAAGGAAGAATCGAATGCGAAGGAGGAGGAATCTTCGTTTATGGAAGCCGTTGATCGGATACCAAAACTGAAATGTGCAATCCTGGAGATGAAATTGGAAGATGAGGAAAAGAATCCGTTGATGAATCGGATCGGTAGCATACAACAGCAAGCAATTTCTTATTCGGAAGAAAAATTCAGGTTCTATCTCGAGGAATCAAGAGATGTCGAATCCAAATCTGATAACGTTGAATCTGATCAACAACTTCTATTTCGAGGTTACTCCGACGAGATCATGATCTATCTGAAACAACTTGCCAACCAAATGATCGCAGGTGGATTCGAATCGGAATGTTGCAGAGTTTACATCCTTGCAAGAAGATACATTTTCGAAGAGACGTTGCATAAGCTCGGGTTCGAGAAACACAGCATCGACGATATCCAGAAGATGAATTGGGAGTCAATGGAGAAAGAGATTGTTACATGGATCGTAATCTTCAAGCAATGTGCCACCGTTCTGTTCTCCGGGGAACGAGATCTCGCCGACTCTGTATTTTCATTGCATCCTCCAATCTCCACCACTCTCTTCACAAACCTCACTCGCAGCATTGTGATTCAACTCCTAAACTTCTTGGAAGGCGTCGGAATGGCGAAACGCTCCGCCGAGAAATTGTTCAAGATCCTCGACATGTACGAAGCTCTCCGTGATCAGATTCCAAAAATCGAGAACTTATTTCCAGAAGAATCAGCCAACGAACTCAAAACAGAAAGCGCAACCGTTCGAACTCGGCTAGGTGAAGCTGCAATTTTCATATTTTGCGATCTCGAGAACTCAATCAAAGCCGACACAGGAAAAACTCCTGTACCAGGCGGCGCAGTTCATCCATTGACTCGATACACAATAAACTACTTAAAATACGCTTGCGAGTACAGAAACACACTGGAACAGATCTTCAAAGATCACGCGAAGATCGAGCGAGCAGATTCGACAAGCAGACCACATTTTGAAGGGGAAGAAGCACCGAATCCAAACTCGAACGCGGAAAATCAATCGCCATTCTCGGTGGAACTGACGAGAATAATGGAGCTTCTGGATGCAAATCTGGAGGGAAAATCAAAGCTATATAGAGACGTACCGCTGAGCTCGATATTCATGATGAACAATGGGCGATACATCCTGCAGAAAATAAAAGGATCAACAGATATTCACCAACTGGTAGGGGATAATTGGTATAGAAAGAGATCTTCGGATCTGCGTCAGTACCACAAGAGTTACCAGAGAGAAACATGGGGAAGATTGCTGGGATGCTTGAACCATGAAGGATTGATGGTTCATGGGAAAGTGGTGAAGCCAGTGCTGAAGGAAAAGTTTAAAGCATTCAACGCTCTCTTCGAAGAGATTCACAAGACGCAGAGCTCGTGGATCATAAGCGACGAGCAGCTTCAATCCGAGCTCCGAGTGTCGATATCAGCGGTTATGATTCCGGCGTACAGATCGTTTCTAGCCAGGTTTTCGCAGTACTTGGATCCAGGGAGACAATATGAGAAATACATTAAGCTCCAGCCTGAAGATATAGAAACCTACATTGATGATCTATTTGATGGAAATCCATCATCCATGGCCAGAAAGAGATAA 2001 44.13 MENQPEQVLEKTTSDDVALTSATDDPKVTISDPDHAAAAVDREVDVKSRENLEDNQDPEKGKEEKEEEGEKKEEDVEESKDEPDHQYNLETILEEVDQFLSTHKQSAGEIPEFIHKFMDLIDAKIEQYKKEESNAKEEESSFMEAVDRIPKLKCAILEMKLEDEEKNPLMNRIGSIQQQAISYSEEKFRFYLEESRDVESKSDNVESDQQLLFRGYSDEIMIYLKQLANQMIAGGFESECCRVYILARRYIFEETLHKLGFEKHSIDDIQKMNWESMEKEIVTWIVIFKQCATVLFSGERDLADSVFSLHPPISTTLFTNLTRSIVIQLLNFLEGVGMAKRSAEKLFKILDMYEALRDQIPKIENLFPEESANELKTESATVRTRLGEAAIFIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKDHAKIERADSTSRPHFEGEEAPNPNSNAENQSPFSVELTRIMELLDANLEGKSKLYRDVPLSSIFMMNNGRYILQKIKGSTDIHQLVGDNWYRKRSSDLRQYHKSYQRETWGRLLGCLNHEGLMVHGKVVKPVLKEKFKAFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQYEKYIKLQPEDIETYIDDLFDGNPSSMARKR 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27006421 27008978 - Sed0011026.1 Sed01g2974 702278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2974 666 MobiDBLite consensus disorder prediction 1 85 - -
Sed01g2974 666 Coils Coil 62 82 - -
Sed01g2974 666 SUPERFAMILY Cullin repeat-like 133 656 IPR016159 -
Sed01g2974 666 MobiDBLite consensus disorder prediction 450 472 - -
Sed01g2974 666 MobiDBLite consensus disorder prediction 1 27 - -
Sed01g2974 666 Coils Coil 118 141 - -
Sed01g2974 666 FunFam Exocyst subunit Exo70 family protein 125 663 - -
Sed01g2974 666 PANTHER EXOCYST COMPLEX PROTEIN EXO70 84 658 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed01g2974 666 Pfam Exo70 exocyst complex subunit C-terminal 283 653 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed01g2974 666 MobiDBLite consensus disorder prediction 28 69 - -
Sed01g2974 666 Gene3D Exocyst complex component Exo70 89 665 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2974 Sed-Chr1:27006421 Sed06g0018 Sed-Chr6:141779 4.80E-87 dispersed
Sed02g1010 Sed-Chr2:47485737 Sed01g2974 Sed-Chr1:27006421 5.50E-155 transposed
Sed01g2974 Sed-Chr1:27006421 Sed03g0894 Sed-Chr3:5548698 2.80E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2974 K07195 - csv:101206040 936.406