Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2974 | ATGGAGAACCAACCTGAACAGGTTCTTGAGAAGACAACTAGCGATGATGTCGCTCTCACATCGGCCACGGATGATCCAAAAGTCACCATTTCGGATCCTGATCATGCTGCTGCTGCTGTTGACAGGGAAGTCGATGTGAAATCTCGAGAAAATTTGGAGGATAATCAAGATCCCGAAAAGGGAAAAGAAGAAAAGGAGGAGGAGGGGGAAAAGAAGGAAGAAGACGTGGAAGAGTCAAAGGATGAACCGGATCATCAATACAATCTCGAGACGATTCTTGAAGAAGTCGATCAATTTTTATCGACTCACAAGCAATCTGCTGGGGAGATTCCGGAGTTCATCCACAAGTTCATGGATCTGATAGATGCTAAAATTGAGCAATACAAAAAGGAAGAATCGAATGCGAAGGAGGAGGAATCTTCGTTTATGGAAGCCGTTGATCGGATACCAAAACTGAAATGTGCAATCCTGGAGATGAAATTGGAAGATGAGGAAAAGAATCCGTTGATGAATCGGATCGGTAGCATACAACAGCAAGCAATTTCTTATTCGGAAGAAAAATTCAGGTTCTATCTCGAGGAATCAAGAGATGTCGAATCCAAATCTGATAACGTTGAATCTGATCAACAACTTCTATTTCGAGGTTACTCCGACGAGATCATGATCTATCTGAAACAACTTGCCAACCAAATGATCGCAGGTGGATTCGAATCGGAATGTTGCAGAGTTTACATCCTTGCAAGAAGATACATTTTCGAAGAGACGTTGCATAAGCTCGGGTTCGAGAAACACAGCATCGACGATATCCAGAAGATGAATTGGGAGTCAATGGAGAAAGAGATTGTTACATGGATCGTAATCTTCAAGCAATGTGCCACCGTTCTGTTCTCCGGGGAACGAGATCTCGCCGACTCTGTATTTTCATTGCATCCTCCAATCTCCACCACTCTCTTCACAAACCTCACTCGCAGCATTGTGATTCAACTCCTAAACTTCTTGGAAGGCGTCGGAATGGCGAAACGCTCCGCCGAGAAATTGTTCAAGATCCTCGACATGTACGAAGCTCTCCGTGATCAGATTCCAAAAATCGAGAACTTATTTCCAGAAGAATCAGCCAACGAACTCAAAACAGAAAGCGCAACCGTTCGAACTCGGCTAGGTGAAGCTGCAATTTTCATATTTTGCGATCTCGAGAACTCAATCAAAGCCGACACAGGAAAAACTCCTGTACCAGGCGGCGCAGTTCATCCATTGACTCGATACACAATAAACTACTTAAAATACGCTTGCGAGTACAGAAACACACTGGAACAGATCTTCAAAGATCACGCGAAGATCGAGCGAGCAGATTCGACAAGCAGACCACATTTTGAAGGGGAAGAAGCACCGAATCCAAACTCGAACGCGGAAAATCAATCGCCATTCTCGGTGGAACTGACGAGAATAATGGAGCTTCTGGATGCAAATCTGGAGGGAAAATCAAAGCTATATAGAGACGTACCGCTGAGCTCGATATTCATGATGAACAATGGGCGATACATCCTGCAGAAAATAAAAGGATCAACAGATATTCACCAACTGGTAGGGGATAATTGGTATAGAAAGAGATCTTCGGATCTGCGTCAGTACCACAAGAGTTACCAGAGAGAAACATGGGGAAGATTGCTGGGATGCTTGAACCATGAAGGATTGATGGTTCATGGGAAAGTGGTGAAGCCAGTGCTGAAGGAAAAGTTTAAAGCATTCAACGCTCTCTTCGAAGAGATTCACAAGACGCAGAGCTCGTGGATCATAAGCGACGAGCAGCTTCAATCCGAGCTCCGAGTGTCGATATCAGCGGTTATGATTCCGGCGTACAGATCGTTTCTAGCCAGGTTTTCGCAGTACTTGGATCCAGGGAGACAATATGAGAAATACATTAAGCTCCAGCCTGAAGATATAGAAACCTACATTGATGATCTATTTGATGGAAATCCATCATCCATGGCCAGAAAGAGATAA | 2001 | 44.13 | MENQPEQVLEKTTSDDVALTSATDDPKVTISDPDHAAAAVDREVDVKSRENLEDNQDPEKGKEEKEEEGEKKEEDVEESKDEPDHQYNLETILEEVDQFLSTHKQSAGEIPEFIHKFMDLIDAKIEQYKKEESNAKEEESSFMEAVDRIPKLKCAILEMKLEDEEKNPLMNRIGSIQQQAISYSEEKFRFYLEESRDVESKSDNVESDQQLLFRGYSDEIMIYLKQLANQMIAGGFESECCRVYILARRYIFEETLHKLGFEKHSIDDIQKMNWESMEKEIVTWIVIFKQCATVLFSGERDLADSVFSLHPPISTTLFTNLTRSIVIQLLNFLEGVGMAKRSAEKLFKILDMYEALRDQIPKIENLFPEESANELKTESATVRTRLGEAAIFIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKDHAKIERADSTSRPHFEGEEAPNPNSNAENQSPFSVELTRIMELLDANLEGKSKLYRDVPLSSIFMMNNGRYILQKIKGSTDIHQLVGDNWYRKRSSDLRQYHKSYQRETWGRLLGCLNHEGLMVHGKVVKPVLKEKFKAFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLARFSQYLDPGRQYEKYIKLQPEDIETYIDDLFDGNPSSMARKR | 666 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 27006421 | 27008978 | - | Sed0011026.1 | Sed01g2974 | 702278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2974 | 666 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Sed01g2974 | 666 | Coils | Coil | 62 | 82 | - | - | |
Sed01g2974 | 666 | SUPERFAMILY | Cullin repeat-like | 133 | 656 | IPR016159 | - | |
Sed01g2974 | 666 | MobiDBLite | consensus disorder prediction | 450 | 472 | - | - | |
Sed01g2974 | 666 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Sed01g2974 | 666 | Coils | Coil | 118 | 141 | - | - | |
Sed01g2974 | 666 | FunFam | Exocyst subunit Exo70 family protein | 125 | 663 | - | - | |
Sed01g2974 | 666 | PANTHER | EXOCYST COMPLEX PROTEIN EXO70 | 84 | 658 | IPR004140 | GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER) | |
Sed01g2974 | 666 | Pfam | Exo70 exocyst complex subunit C-terminal | 283 | 653 | IPR046364 | GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro) | |
Sed01g2974 | 666 | MobiDBLite | consensus disorder prediction | 28 | 69 | - | - | |
Sed01g2974 | 666 | Gene3D | Exocyst complex component Exo70 | 89 | 665 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2974 | Sed-Chr1:27006421 | Sed06g0018 | Sed-Chr6:141779 | 4.80E-87 | dispersed | |
Sed02g1010 | Sed-Chr2:47485737 | Sed01g2974 | Sed-Chr1:27006421 | 5.50E-155 | transposed | |
Sed01g2974 | Sed-Chr1:27006421 | Sed03g0894 | Sed-Chr3:5548698 | 2.80E-236 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2974 | K07195 | - | csv:101206040 | 936.406 |