Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2981 ATGCATAAAATGGCCGCTTCATCATCCCTTCTCCCATACTCCCCCTCATTTCAAGCCCATCTCTCCCCAGAAACCAACCTATATTCTCCCCTCTCTCCGATCCGCTTCTCCAGGTCCAGCTTCTTCACAACCCCTAATTTTGTACGCAACAAGAATCCATCCATCCTATGCCGGGCTCTCGAACTTGGGAATTCACTTTCTCCATCAATAACCAAGAAATTTGAGCTCGACGATGTAATCGAGGCTCAGCAGTTTGATACCCACATTCTCAATCGTATTTTTGAGGTTGCGCTTGACATGGAAAAGATTGAAAAAGGCTCATCCAAAAGCCAAATGCTGAAGGGATATCTGATGGCAACCCTGTTCTACGAGCCCTCTACCAGGACCAGGCTTTCCTTTGAATCTGCCATGAAAAGGTTAGGTGGGGAGGTTTTGACCACTGAAAATGCAAGGGAGTTCTCTTCCGCCGCCAAAGGAGAGACCCTTCAAGACACCATCAGAACTGTTGAGGGCTACTCGGATATTATTGTGATGCGCCATTTTGAGAGTGGTGCTGCTAGGAAGGCTGCTGTAACTGCTAACATTCCTGTTATCAATGCTGGTGATGGTCCTGGGCAACATCCTACTCAGGCCCTTCTAGATGTGTATACTATTCAGAGAGAGATAGGAACACTGGATGGTATCAAAGTTGGGCTGGTGGGAGATCTTGCGAATGGGAGAACTGTTCGGTCACTTGCATATTTGCTTGCCAAGTATCGAGATGTGAAAATATACTTTGTCTCTCCGGATGTTGTAAAAATGAAGGATGATATAAAAGACTATTTGACATCACAAGGTGTGAAGTGGGAAGAATGTGGCGACTTGATTGAAGTTGCATCAGAGTGTGATGTCGTATATCAAACTCGTATTCAGCGGGAAAGATTTGGAAAGAGGATTGATCTTTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAAAATGTGTTAAAAGTGATGCAGAAACATGCCGTAGTCATGCACCCCCTCCCTAGGCTTGATGAGATCACTGTGGATGTAGACGAGGATCCGAGAGCTGCCTACTTCCGACAAGCGAAGAATGGTCTCTATATTCGGATGGCTCTCGTGAAACTCTTGCTTCTTGGTTGGTGA 1149 45.6 MHKMAASSSLLPYSPSFQAHLSPETNLYSPLSPIRFSRSSFFTTPNFVRNKNPSILCRALELGNSLSPSITKKFELDDVIEAQQFDTHILNRIFEVALDMEKIEKGSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLQDTIRTVEGYSDIIVMRHFESGAARKAAVTANIPVINAGDGPGQHPTQALLDVYTIQREIGTLDGIKVGLVGDLANGRTVRSLAYLLAKYRDVKIYFVSPDVVKMKDDIKDYLTSQGVKWEECGDLIEVASECDVVYQTRIQRERFGKRIDLYEQARGKYIVDKNVLKVMQKHAVVMHPLPRLDEITVDVDEDPRAAYFRQAKNGLYIRMALVKLLLLGW 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27283208 27285994 + Sed0025734.2 Sed01g2981 702285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2981 382 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 122 129 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 PANTHER ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL 71 379 - -
Sed01g2981 382 PRINTS Aspartate carbamoyltransferase signature 338 343 - -
Sed01g2981 382 PRINTS Aspartate carbamoyltransferase signature 360 374 - -
Sed01g2981 382 PRINTS Aspartate carbamoyltransferase signature 298 307 - -
Sed01g2981 382 PRINTS Aspartate carbamoyltransferase signature 112 134 - -
Sed01g2981 382 PRINTS Aspartate carbamoyltransferase signature 152 161 - -
Sed01g2981 382 PRINTS Aspartate carbamoyltransferase signature 206 223 - -
Sed01g2981 382 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 76 379 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 Gene3D Aspartate/ornithine carbamoyltransferase 207 366 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 FunFam Aspartate carbamoyltransferase 78 210 - -
Sed01g2981 382 NCBIfam aspartate carbamoyltransferase 78 379 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
Sed01g2981 382 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 78 219 IPR006132 GO:0006520(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 FunFam Aspartate carbamoyltransferase 2 211 366 - -
Sed01g2981 382 Gene3D Aspartate/ornithine carbamoyltransferase 79 374 IPR036901 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 344 367 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 122 141 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 334 343 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 207 218 IPR006130 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 226 377 IPR006131 GO:0006520(InterPro)|GO:0016597(InterPro)|GO:0016743(InterPro)
Sed01g2981 382 Hamap Aspartate carbamoyltransferase [pyrB]. 76 381 IPR002082 GO:0004070(InterPro)|GO:0006207(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2981 K00609 - - csv:101220705 623.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2980 Sed-Chr1:27283208 Sed01g2981 Sed-Chr1:27283208 1.30E-217 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00492 . . . . . . . . . . Sed01g2981 . . . . . . Cpe14g00722 . Bhi11g00591 Tan01g1733 Cmetu06g0270 . . . . . . . . . . . . . Chy06g01834 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37