Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2998 ATGAAGAGGGAGTTTGAGGGTGATGATGATAGATCTGGCGGCGGCGGAGGAGGAGGGCGGGAAGCTGTGAAAGGGAAAGAGAAGGTGTTGGAGGAAGAGCAAGACGACGGCGGCGGCGGAATGGATGAGCTGCTTGCCGTTTTGGGCTACAAGGTTCGGTCCACGGAAATGGAGGATGTGGCTCACAAGCTCGAGCAGTGGGAGATGATAATGGGAACTGGTCAGGAATATGGGATTTCTCATCTCCCTAATCCTGACACTGTTCATTACAATCCCGCCGATCTCTCTTCCTTTGTCCAAAACATCATTTCTGGATTCACTAACTCTTCCCTTCCACCTCCCACGCCCTCCCGATTGTACCACGACGATCTCAGCGCCATTCCTGGGGTGGCGGTTCTGCCTCCTCCCAAACACTCTCAATCCGAAATCGAAACGAATTCCCGAAAGCGAGTGAAGATGGAAGGAGAGAGTTCGGGGAATTTGGCGCCGTTGCCGTTGACGGTGGTGGTGGTGGTGGAGGAGCATTCGCAGGAGACGGGGATTCAACTGGTTCACACTCTGATGGCCTGCGCGGAGGCGGTTCAGGAAGAGAACATGAAGCTAGCCGAGGCGTTGGTGAAGCACATCGGACTATTGGCGGCGTCGCAGGCCGGAGCGATGAGGAAGGTGGCCACCTATTTCGCGGAAGCTCTCGCTCGTCGGATTTACAGAATCTACTCTCCTCAGGACGTCCTTCACTCCGATCTCCTCCAGATGCACTTTTACGAGACTTGCCCCTATCTCAAATTCGCCCATTTCACTGCCAATCAAGCCATTCTGGAAGCCTTTGCTTCTGCATCCAGGGTTCATGTCATTGATTTCAGTCTCAATCAGGGTATGCAGTGGCCGGCCTTGATGCAGGCCCTCGCCGCATTACGCCCGGGTGGCCCCCCGGCCTTTCGATTGACCGCCATCGGCTTCCCGCAGCCCGCTTCCGCTGCGGATTCCTTGCAGGAAGTGGGCTGGAAGTTAGCTCAGTTTGCCAAGGCTATTGGTGTTGACTTCGACTTCAACCACATCGTCTGTGCGGATCTCGCGGACCTCGATCCGGCGGCTCTCGCGATTCGCCCGGCGGTGGCGGAGGCGGTGGCCGTGAATTCCGTGTTCGATCTCCACCGCCTGTTGGCGCGGCCTGGAGCGATGGAGAAGGTCTTGGGTTTGATAAAGACGACGCAGCCCAAGATTGTGACGATGGTGGAACAGGAAGCCAACCACAACGGGCCGGTTTTTATGGACCGGTTTACTCAGTCCTTGCACTATTACTCGACTCTTTTCGACTCGCTCGAGGGGTCCTCGGCCGGGTTCGGACCGGCAAGTGAGGACGTGCAGATGTCGGAGATTTATCTGGGGAGGCAGATTTGTAATGTGGTGGCTTGCGAAGGGACGGACCGAGTCGAGCGGCACGAGCCATTCACGCAGTGGCGAACTCGGATGGAATCGGCTGGGTTCGACCCGGTTCCGCTCGGTTCAAACGCGTTCAAGCAGGCCAGCTTGCTTTTGGAACTATCGGGCGGAGATGGGTACAGGGTGGAAGAGAATAATGGGTGTTTGATGCTTGGCTGGCACACTCGACCGTTGATCGCCACGTCAGCTTGGCAACTCGCCGTCCATGAGTCGACTCAGTGA 1665 56.7 MKREFEGDDDRSGGGGGGGREAVKGKEKVLEEEQDDGGGGMDELLAVLGYKVRSTEMEDVAHKLEQWEMIMGTGQEYGISHLPNPDTVHYNPADLSSFVQNIISGFTNSSLPPPTPSRLYHDDLSAIPGVAVLPPPKHSQSEIETNSRKRVKMEGESSGNLAPLPLTVVVVVEEHSQETGIQLVHTLMACAEAVQEENMKLAEALVKHIGLLAASQAGAMRKVATYFAEALARRIYRIYSPQDVLHSDLLQMHFYETCPYLKFAHFTANQAILEAFASASRVHVIDFSLNQGMQWPALMQALAALRPGGPPAFRLTAIGFPQPASAADSLQEVGWKLAQFAKAIGVDFDFNHIVCADLADLDPAALAIRPAVAEAVAVNSVFDLHRLLARPGAMEKVLGLIKTTQPKIVTMVEQEANHNGPVFMDRFTQSLHYYSTLFDSLEGSSAGFGPASEDVQMSEIYLGRQICNVVACEGTDRVERHEPFTQWRTRMESAGFDPVPLGSNAFKQASLLLELSGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAVHESTQ 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29728891 29731175 + Sed0018894.1 Sed01g2998 702302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2998 554 ProSiteProfiles GRAS family profile. 174 546 IPR005202 -
Sed01g2998 554 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 154 545 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Sed01g2998 554 Pfam GRAS domain family 183 546 IPR005202 -
Sed01g2998 554 Pfam Transcriptional regulator DELLA protein N terminal 42 108 IPR021914 -
Sed01g2998 554 SMART DELLA_2 42 116 - -
Sed01g2998 554 Gene3D - 40 106 IPR038088 -
Sed01g2998 554 MobiDBLite consensus disorder prediction 1 35 - -
Sed01g2998 554 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2998 Sed-Chr1:29728891 Sed03g1115 Sed-Chr3:6875616 4.70E-160 dispersed
Sed01g2998 Sed-Chr1:29728891 Sed05g0961 Sed-Chr5:7904776 1.60E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37334 PF03514 GRAS 1.10E-133 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2998 K14494 - csv:101213911 765.377