Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3001 ATGTTGGGTAAGCATTTATGTTTTGAACCATTGTGGGATGCTATAGAATCCATGAGCACTGAAGGGCTCATTTCTTTGGCCACTTTTTCTTCCGTGTTTAGTGGTTATGTTGCACTCATCGTGTTAAGGATGTCATTCAAGCATTTGAGGTTATGGATGCTTATGGTTGTTCTCGTTGGTTGGGATCCGACCAATACCCCTACTTATAGTTCCTTTTTATGTGTATTGCTGAAGTACCCCGATGGATTGGTCGAGGCATTGATGTTATACAAGAGATTAAAGGATAAGGTGTGCTATTCGGGGTTTAAGTTTTTCAAGCTTGCCCTTGATGAGTGTGTAAAGAATGGCGACGTCAAAGTGGGGAAGTACCTTTGGATTGAAATCATAGAGAGTACTCATTTCCAGCTTGATACACACATGTACAATTTGATGATTGCTTTAAGATGTCATAAAAATGACATTGATGCAGCAAAAAGACTGTTAGATAAGATGATATTTAATGGGGCATTTCCAAATTTGGAAACTTACAATTTGTTATTTCAGTTCTTATTAAACGGAAGAATGTTGAAGGAGGCTTCCAGTGTATTTGATGAAATGACAAAAAATGAGTTTGTTCCGAGCCATCCAAATGGGGCCATAAAAGTATGGAAATATATGCTTAAAAACTATGAATCTGATCTTGAAGAGATTGGTAATTTCTTTATTCTAGGACTTCGAGATCTAAAGAGGTTGTCAGAAGCAGTTAAATATGCTCATGAGATGACTGATAGAGGAATCATATTAAGACATTCGACTTTTTCCAAACTAAAATAG 813 36.78 MLGKHLCFEPLWDAIESMSTEGLISLATFSSVFSGYVALIVLRMSFKHLRLWMLMVVLVGWDPTNTPTYSSFLCVLLKYPDGLVEALMLYKRLKDKVCYSGFKFFKLALDECVKNGDVKVGKYLWIEIIESTHFQLDTHMYNLMIALRCHKNDIDAAKRLLDKMIFNGAFPNLETYNLLFQFLLNGRMLKEASSVFDEMTKNEFVPSHPNGAIKVWKYMLKNYESDLEEIGNFFILGLRDLKRLSEAVKYAHEMTDRGIILRHSTFSKLK 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30209232 30210284 + Sed0011706.1 Sed01g3001 702305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3001 270 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 59 269 - -
Sed01g3001 270 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Sed01g3001 270 NCBIfam pentatricopeptide repeat 175 207 IPR002885 -
Sed01g3001 270 NCBIfam pentatricopeptide repeat 140 172 IPR002885 -
Sed01g3001 270 Gene3D Tetratricopeptide repeat domain 81 270 IPR011990 GO:0005515(InterPro)
Sed01g3001 270 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Sed01g3001 270 Pfam PPR repeat family 137 181 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3001 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3001 Sed-Chr1:30209232 Sed03g0882 Sed-Chr3:5455798 1.20E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g381 . . . . . . . . Cmo04g01550 . . . . . Sed01g3001 . . Bhi07g01260 Tan04g0796 Cmetu10g0315 Lac13g0542 . . . . . . . . . . . . . Cone9ag0441 . Csa05g02048 Chy10g01188 Cme10g00216 . . . . . . . . . Cmo04g02188 Cmo15g00977 Cma04g02086 Cma15g00937 Car04g02025 Car15g00879 . . Bhi12g00865 . . . . . Lcy10g1458 Cla01g00587 Cam01g0613 Cec01g0604 Cco01g0629 Clacu01g0605 Cmu01g0578 Cre09g1927 Lsi09g00636 . Chy09g00878 Cme09g01412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011518 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 0 2 1 1 30