Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3002 ATGGCACTTTCAAATTCATCCATACAAGAAGTCCATAACATGAACAAATCCAATGGAGATATCAAGTCCTTAGCCATTGGAAGCCATCACGAGAATTCGAATCCCAACTTCGAGTTTCAAAACATGACTGATGACGAACTCGATCACCATCACAATCAGCATCAAATGTGCCAATCTCTCATCAACTTCAAGTGTGGAATGGACAACATTTTTCATAAGAACAATGAATCTTTGCTGAGCTTTGAGCCACAAGGGGTTTGTGATGAAGACACTTATAATTGGGATCAGCAACGGCTCATGGATGATCCCAATTGCTTTCAAACAGCTACCAATAATTGGCTTTATTGTGAGGGAGCTGTTGTTTCTGATGCTAATCAGGAGGCTGATGTAACTCAAGAGATTAGCAACCAAAAGCGACAACTTGTGGGAGAGAGCAGCGGGGGAGTTTGTAAAAAGCAATGTGTTGGTGCAGCTAAGAAACAGAAACCCAAATCTTCAACAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTGCAGGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGCTTGAGAAAGCAATCAGTTATGTCAAATTTCTCCAAGTACAAGTGAAGATCTTAGCTAGCGATGAATTTTGGCCCGTTCAAGGTGGAAAAGCTCCGGATATTTCCCAAGTTAAGGAAGCCATTGACGCCATTCTGTCATCTCAAAGAGAAAGAAGCTCAAGCTCAAACAGTGAAAAGTGA 795 42.64 MALSNSSIQEVHNMNKSNGDIKSLAIGSHHENSNPNFEFQNMTDDELDHHHNQHQMCQSLINFKCGMDNIFHKNNESLLSFEPQGVCDEDTYNWDQQRLMDDPNCFQTATNNWLYCEGAVVSDANQEADVTQEISNQKRQLVGESSGGVCKKQCVGAAKKQKPKSSTAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQVQVKILASDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSSNSEK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30253436 30256281 - Sed0001483.1 Sed01g3002 702306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3002 264 Gene3D - 160 224 IPR036638 GO:0046983(InterPro)
Sed01g3002 264 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 30 234 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3002 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 165 225 IPR036638 GO:0046983(InterPro)
Sed01g3002 264 Pfam Helix-loop-helix DNA-binding domain 175 217 IPR011598 GO:0046983(InterPro)
Sed01g3002 264 CDD bHLH_AtIND_like 168 230 - -
Sed01g3002 264 FunFam Transcription factor bHLH83 165 224 - -
Sed01g3002 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983(InterPro)
Sed01g3002 264 SMART finulus 173 222 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3002 Sed-Chr1:30253436 Sed07g1264 Sed-Chr7:9507937 8.50E-19 dispersed
Sed01g3002 Sed-Chr1:30253436 Sed03g0881 Sed-Chr3:5449890 2.30E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37335 PF00010 HLH 8.00E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3002 - - - 0.0