Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g3013 | ATGGCGGGAGGCGGGGGCGGAAGGGAGGAGAGTGGAAGCCGGGGGCTGGTTTGGGATAATGAGGAGGAGGATCAGTATCAGGTGGAGAGCGTCCACGAAGGGATTGCTTCCTCGCGAGGGAGCCGGTTCGATCTGGTTCAGAGGCAGTTGAGGATTAAACCGCCTCGCCCTCGCCCTCGCCCAACACTAAACCGCCAAAATCTCTTCCATCGCATCAAATGCTTCCTCATCCTCCCTCACACCAGATGGTACAAGGCTTGGACGCAGTTCATACTGATATGGGCAATCTACTCTTCTTTCTTCACGCCTATGGAGTTCGGATTCTTTAGGGGATTGCCAGAGAATCTATTTATACTCGACATTGTCGGACAGATTGCTTTCCTTTTCGACATTGTTTTCCAGTTCTTCCTTGCCTATAGAGACAGTCAGACATACCGAATGGTCTATAACCGCACTCCAATAGCACTCAAGTATTTGAAATCCACTTTTGTGACTGATTTTCTCAGCTGTATGCCCTGGGATATCATTTATAAGGTTTGTGGGAGAAGAGAAGAAGTGAGATACCTCCTATGGATACGGTTATTCCGGGTGCGAAAAATCACAGATTTTTTTCAAACATTGGAAAAGGATATACGTATTAGCTATATGTTCACTAGAATTATCAAGCTCCTTGTCGTTGAACTTTACTGCACACACACTGCGGCCTGCATCTTTTACTATTTGGCAACTACTCTTTCTCCTTCTGAAGAAGGGTACACATGGATTGGAAGCTTGAAATTGGGAGACTACTCTTACTCACATTTCAGAGACATTGATTTGTGGAAACGCTACACCACATCTTTATATTTTGCTATTGTCACCATGGCTACTGTTGGTTATGGAGATATACATGCAGTCAACTTGAGGGAAATGATATTTGTTATGATTTATGTGTCATTTGACATGGTTCTGGGTGCTTATTTGGTTGGTAACATGACTGCATTGATTGTAAAAGGATCCAAGACAGTGAAATTCAGGGATAAAATGGCAGATGTAATAAAATACATGAATAGAAATAGACTTGACAGAGATATCCGTGATCAGATCAAAGGTCACTTGCGTTTACAGTACGAAAGTAGCTACACTGAGGCTACTGTTCTACAGGACATCCCAATATCAATCCGTGCTAAGATTTTCCAAACACTATACTTGCCTTGTATTCAGAATGTTTCTTTATTTAGAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATCAAACTCCATGAAGAGTTTTTTCTCCCTGGAGAAGTGATAATGGAGCAAGGAAATGTAGTTGATCAGCTTTATTTTGTCTGTGATGGTGAGCTGGAGGAATTGGGCATAGGACAAGATGGCTCGGAAGAGACCATATCTTCACTACAGCCCAACAGCTCTTTTGGAGAGATATCAATTCTTTGCAACATTCCTCAACCTTATACTGTTCGAGTATGCGAGTTGTGTAGGCTTTTGCGAATCGACAAGCAGTCCTTTACAAATATCCTTGACATATACTTTTACGATGGGAGAAAAATCTTGAACAACCTTCTAGAGGGAAAGGATACAAACCTTCGAATTAAGCAATTGGAGTCAGATATCACATTTCATATTGGTAAGCAAGAAGCTGAGCTTGCTCTCAAGGTCAACAGTGCAGCATATCATGGAGATCTACACCAATTAAAAGGTCTCATTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCATCCAGAGGATTTGAGGATGTAGTTGTTTTCCTAATTCAAGGAGGAGTAAACATTGACCTTAAAGATAACTTTGGCAATACTCCATTAATGGAAGCTATCAAGAATGGGAACGATCAAATTGCTACTCTGCTTTCTAACAAGGGTGCTTCATTGAAGGTTGAGAATGCTGGTAGCTTCCTGTGTACAGCAGTTTCAAGGGGTGATTTAGATATTATAAAGAGATTGTTGTGCTATGGCATTGACCCCAACTCGAAAGATTACGATTATCGAACTCCGCTGCATATAGCTGCATCAGAAGGGCTACATTTGATGGCAAAGTTGCTCTTAGAATCTGGGGCTAATGTACTCTCAAAGGACAGATGGGGAAACACCCCGCTTGATGAAGGCCGGAAATGTGGAAACAAGAAATTGGTGATGCTCTTGGAAGAAGAGGCAAAGAATACTCAGTTATCAGAAACCCCTTGTCCCTCTCGAGAACTCCCAGTAAGAAACCACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATCCTAAAGAGAAGAGAAGACCTGGAATTGTGCTATGGGTTCCACTCACCATTGAGGAGCTGATTGAAGCATCATCAGAACAGCTACAAGTTTCAGACAAATGTTGTATACTATCAGAAGATGGAGGTAAAATTCTTGATGTCCATATGATTGATGAATCCCAAAAGCTATATCTAGTTCCTCAAACTCATTAG | 2499 | 42.22 | MAGGGGGREESGSRGLVWDNEEEDQYQVESVHEGIASSRGSRFDLVQRQLRIKPPRPRPRPTLNRQNLFHRIKCFLILPHTRWYKAWTQFILIWAIYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIVFQFFLAYRDSQTYRMVYNRTPIALKYLKSTFVTDFLSCMPWDIIYKVCGRREEVRYLLWIRLFRVRKITDFFQTLEKDIRISYMFTRIIKLLVVELYCTHTAACIFYYLATTLSPSEEGYTWIGSLKLGDYSYSHFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMVLGAYLVGNMTALIVKGSKTVKFRDKMADVIKYMNRNRLDRDIRDQIKGHLRLQYESSYTEATVLQDIPISIRAKIFQTLYLPCIQNVSLFRGCSPEFINQIVIKLHEEFFLPGEVIMEQGNVVDQLYFVCDGELEELGIGQDGSEETISSLQPNSSFGEISILCNIPQPYTVRVCELCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKDTNLRIKQLESDITFHIGKQEAELALKVNSAAYHGDLHQLKGLIRAGADPNKTDYDGRSPLHLAASRGFEDVVVFLIQGGVNIDLKDNFGNTPLMEAIKNGNDQIATLLSNKGASLKVENAGSFLCTAVSRGDLDIIKRLLCYGIDPNSKDYDYRTPLHIAASEGLHLMAKLLLESGANVLSKDRWGNTPLDEGRKCGNKKLVMLLEEEAKNTQLSETPCPSRELPVRNHSKKCTVFPFHPWDPKEKRRPGIVLWVPLTIEELIEASSEQLQVSDKCCILSEDGGKILDVHMIDESQKLYLVPQTH | 832 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 31888211 | 31907524 | + | Sed0006277.1 | Sed01g3013 | 702317 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g3013 | 832 | ProSiteProfiles | KHA domain profile. | 759 | 832 | IPR021789 | - | |
| Sed01g3013 | 832 | Pfam | Ankyrin repeats (3 copies) | 557 | 645 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | Pfam | Ankyrin repeats (3 copies) | 651 | 736 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | Gene3D | Jelly Rolls | 389 | 528 | IPR014710 | - | |
| Sed01g3013 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 582 | 614 | - | - | |
| Sed01g3013 | 832 | SUPERFAMILY | cAMP-binding domain-like | 333 | 523 | IPR018490 | - | |
| Sed01g3013 | 832 | SUPERFAMILY | Voltage-gated potassium channels | 79 | 330 | - | - | |
| Sed01g3013 | 832 | CDD | CAP_ED | 405 | 519 | IPR000595 | - | |
| Sed01g3013 | 832 | PRINTS | Ankyrin repeat signature | 695 | 709 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | PRINTS | Ankyrin repeat signature | 583 | 598 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Sed01g3013 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 615 | 647 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | SMART | cnmp_10 | 405 | 523 | IPR000595 | - | |
| Sed01g3013 | 832 | Gene3D | Helix hairpin bin | 332 | 388 | - | - | |
| Sed01g3013 | 832 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 405 | 525 | IPR000595 | - | |
| Sed01g3013 | 832 | SUPERFAMILY | Ankyrin repeat | 555 | 733 | IPR036770 | - | |
| Sed01g3013 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 277 | 294 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed01g3013 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 229 | 239 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed01g3013 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 321 | 330 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed01g3013 | 832 | PRINTS | EAG/ELK/ERG potassium channel family signature | 120 | 130 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed01g3013 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 679 | 711 | - | - | |
| Sed01g3013 | 832 | Gene3D | - | 645 | 744 | IPR036770 | - | |
| Sed01g3013 | 832 | Gene3D | - | 533 | 644 | IPR036770 | - | |
| Sed01g3013 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 646 | 678 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | Pfam | KHA, dimerisation domain of potassium ion channel | 758 | 827 | IPR021789 | - | |
| Sed01g3013 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 679 | 711 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | ProSiteProfiles | Ankyrin repeat profile. | 582 | 614 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | Pfam | Ion transport protein | 84 | 332 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed01g3013 | 832 | FunFam | Potassium channel KAT2 | 393 | 529 | - | - | |
| Sed01g3013 | 832 | SMART | ANK_2a | 615 | 644 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | SMART | ANK_2a | 646 | 675 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | SMART | ANK_2a | 582 | 611 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | SMART | ANK_2a | 679 | 708 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | SMART | ANK_2a | 549 | 578 | IPR002110 | GO:0005515(InterPro) | |
| Sed01g3013 | 832 | Gene3D | - | 86 | 331 | - | - | |
| Sed01g3013 | 832 | FunFam | Potassium channel SKOR | 85 | 330 | - | - | |
| Sed01g3013 | 832 | Pfam | Cyclic nucleotide-binding domain | 425 | 509 | IPR000595 | - | |
| Sed01g3013 | 832 | ProSiteProfiles | Ankyrin repeat region circular profile. | 615 | 646 | - | - | |
| Sed01g3013 | 832 | PANTHER | POTASSIUM CHANNEL AKT1 | 38 | 827 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g3013 | Sed-Chr1:31888211 | Sed12g2387 | Sed-Chr12:33723683 | 3.80E-89 | dispersed | |
| Sed01g3013 | Sed-Chr1:31888211 | Sed03g0864 | Sed-Chr3:5264391 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g3013 | K21867 | - | csv:101210912 | 1419.06 |