Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3024 ATGCATCGTCTCCCTCCGTTTTTCTCTCCCAGGAACCGAAGAAAAGCAATGGATCCCAGAAAAGTGCCTGGCGAACCCAGGCTTGGCCGGCTTAATGCCGCTAAGAACATCGACTATGACGCCCCCTCCTCTTCTTCTGGGTCTCTTCACACTCGCTCCATGGATCCCTCCAGCTTTAGGGTCAAAGGGCTTGACGGTGAGTTCGATCGCTATTGCCAAATTTTAGGGCTAACCGGCCCTGAAGACTTCGCTATTCCCATGGAGGCTTGGGAGGCCAGAAAGCCCCGCCCATCCTCCGACCTTCCACTCAACTCCACACTGCACCACCCTGTGGAGGTTAGTAAGGAAAGGGAACAGGAATTGTGTCCAAGAGTTAACGATTCAGTGAGAATTAGCGTCCACATATCGCCGCCCAACACTGAATTTCTTGAGCTGCATACGCGCCGTTTGGCTACTGCTGGCTGTAGCCCCAGAACTGGGATCAATGGTGCTCGCCCGCCCTTACTTAAGCCGCCGCCCTTCTTGCGCCCTCCGGATGTCGACCATACTTGCTCCAATTGGGACCTCTTGAAAACTTTTGCTCCTTTAGTTGACGACCAAAATCAGGATCACGTTCCAGAACGAATCGAACCTAGACCCTCGCGGATTGGGTCTTGCGAGTCCTTCTCAACCTCCAATGATGATGACTCTTCCAGCACGACAACCGAGCCTGCAAATGTTTCGCCCAATTTGAGATGTAAACCCATGATTACCTCCTGGATAGCGGGAAAGCGTCTAGGGAGCGGTTCATTTGGCTTAGTATATGAAGCTATTTCACAGGATGGGAACTTTTTTGCAATCAAGGAAGTTTCACTCCTCGATGATGATAGTCAGGGGAGACAAAGCATCTCTCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCACGAGAACATAGTGCAGTACTACGGCACGGATACGGCGCCAGATGGGTCAAAACTATATATCTTCCTTGAGCTTGTATCCCAGGGCTCCCTTATGAGTCTATATCAGAGGATTCACCTTATGGATTCCATTGTTTCTGCCTATACAAGGCAGATTCTGTCTGGTTTGAAGTATCTTCATGATCAAAATGTGGTACACAGGGATATTAAGTGTGCTAATATATTGGTGGATGTGACTGGATCTGTGAAGCTTGCAGATTTTGGTTTGGCTAAGGCAACAAAATTGAACGATGTTAAATCTTGCAAGGGAACTGCGTTCTGGATGGCACCTGAGGTGGTTAATAGGAAGGGCCAGGGATATGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACTGTATTGGAAATGTTAACTCGAAAGCTTCCATACTCAGAATTCGAATCTCCTATGCAGGCCTTATATAAGATTGGAAAAGGCAGACCGCCAATGGTTCCCGAGTCACTCTCTGAAGATGCTCGGGATTTCATACTGCAGTGCCTACAAGTTAATCCGCAGGACCGTCCTACTGCTGCTGATCTTTCAAATCACTCATTTGTGAAAAAATCAGATTCCAGTGCATATTCTTACAACAGGACAGGCGGAAGGATTTGA 1581 48.51 MHRLPPFFSPRNRRKAMDPRKVPGEPRLGRLNAAKNIDYDAPSSSSGSLHTRSMDPSSFRVKGLDGEFDRYCQILGLTGPEDFAIPMEAWEARKPRPSSDLPLNSTLHHPVEVSKEREQELCPRVNDSVRISVHISPPNTEFLELHTRRLATAGCSPRTGINGARPPLLKPPPFLRPPDVDHTCSNWDLLKTFAPLVDDQNQDHVPERIEPRPSRIGSCESFSTSNDDDSSSTTTEPANVSPNLRCKPMITSWIAGKRLGSGSFGLVYEAISQDGNFFAIKEVSLLDDDSQGRQSISQLQQEIALLSEFEHENIVQYYGTDTAPDGSKLYIFLELVSQGSLMSLYQRIHLMDSIVSAYTRQILSGLKYLHDQNVVHRDIKCANILVDVTGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNRKGQGYGLPADIWSLGCTVLEMLTRKLPYSEFESPMQALYKIGKGRPPMVPESLSEDARDFILQCLQVNPQDRPTAADLSNHSFVKKSDSSAYSYNRTGGRI 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32411447 32418632 + Sed0019759.2 Sed01g3024 702328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3024 526 ProSitePatterns Protein kinases ATP-binding region signature. 259 281 IPR017441 GO:0005524(InterPro)
Sed01g3024 526 PRINTS Tyrosine kinase catalytic domain signature 333 346 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3024 526 PRINTS Tyrosine kinase catalytic domain signature 478 500 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3024 526 PRINTS Tyrosine kinase catalytic domain signature 434 456 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3024 526 PRINTS Tyrosine kinase catalytic domain signature 368 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3024 526 ProSiteProfiles Protein kinase domain profile. 253 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3024 526 MobiDBLite consensus disorder prediction 199 243 - -
Sed01g3024 526 SMART serkin_6 253 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3024 526 SUPERFAMILY Protein kinase-like (PK-like) 252 515 IPR011009 -
Sed01g3024 526 Gene3D Transferase(Phosphotransferase) domain 1 252 522 - -
Sed01g3024 526 MobiDBLite consensus disorder prediction 1 55 - -
Sed01g3024 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3024 526 MobiDBLite consensus disorder prediction 217 241 - -
Sed01g3024 526 FunFam Mitogen-activated protein kinase 1, putative, expressed 251 521 - -
Sed01g3024 526 Pfam Protein kinase domain 256 509 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3024 526 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 148 513 IPR050538 -
Sed01g3024 526 MobiDBLite consensus disorder prediction 38 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3024 Sed-Chr1:32411447 Sed03g0841 Sed-Chr3:5091754 1.00E-220 dispersed
Sed01g3023 Sed-Chr1:32411447 Sed01g3024 Sed-Chr1:32411447 9.10E-307 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78689 PF00069 Pkinase 2.10E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3024 K13414 - csv:101218538 758.059