Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3024 | ATGCATCGTCTCCCTCCGTTTTTCTCTCCCAGGAACCGAAGAAAAGCAATGGATCCCAGAAAAGTGCCTGGCGAACCCAGGCTTGGCCGGCTTAATGCCGCTAAGAACATCGACTATGACGCCCCCTCCTCTTCTTCTGGGTCTCTTCACACTCGCTCCATGGATCCCTCCAGCTTTAGGGTCAAAGGGCTTGACGGTGAGTTCGATCGCTATTGCCAAATTTTAGGGCTAACCGGCCCTGAAGACTTCGCTATTCCCATGGAGGCTTGGGAGGCCAGAAAGCCCCGCCCATCCTCCGACCTTCCACTCAACTCCACACTGCACCACCCTGTGGAGGTTAGTAAGGAAAGGGAACAGGAATTGTGTCCAAGAGTTAACGATTCAGTGAGAATTAGCGTCCACATATCGCCGCCCAACACTGAATTTCTTGAGCTGCATACGCGCCGTTTGGCTACTGCTGGCTGTAGCCCCAGAACTGGGATCAATGGTGCTCGCCCGCCCTTACTTAAGCCGCCGCCCTTCTTGCGCCCTCCGGATGTCGACCATACTTGCTCCAATTGGGACCTCTTGAAAACTTTTGCTCCTTTAGTTGACGACCAAAATCAGGATCACGTTCCAGAACGAATCGAACCTAGACCCTCGCGGATTGGGTCTTGCGAGTCCTTCTCAACCTCCAATGATGATGACTCTTCCAGCACGACAACCGAGCCTGCAAATGTTTCGCCCAATTTGAGATGTAAACCCATGATTACCTCCTGGATAGCGGGAAAGCGTCTAGGGAGCGGTTCATTTGGCTTAGTATATGAAGCTATTTCACAGGATGGGAACTTTTTTGCAATCAAGGAAGTTTCACTCCTCGATGATGATAGTCAGGGGAGACAAAGCATCTCTCAACTTCAGCAGGAGATAGCTCTTCTAAGTGAGTTTGAGCACGAGAACATAGTGCAGTACTACGGCACGGATACGGCGCCAGATGGGTCAAAACTATATATCTTCCTTGAGCTTGTATCCCAGGGCTCCCTTATGAGTCTATATCAGAGGATTCACCTTATGGATTCCATTGTTTCTGCCTATACAAGGCAGATTCTGTCTGGTTTGAAGTATCTTCATGATCAAAATGTGGTACACAGGGATATTAAGTGTGCTAATATATTGGTGGATGTGACTGGATCTGTGAAGCTTGCAGATTTTGGTTTGGCTAAGGCAACAAAATTGAACGATGTTAAATCTTGCAAGGGAACTGCGTTCTGGATGGCACCTGAGGTGGTTAATAGGAAGGGCCAGGGATATGGTCTTCCGGCCGATATCTGGAGCCTTGGGTGCACTGTATTGGAAATGTTAACTCGAAAGCTTCCATACTCAGAATTCGAATCTCCTATGCAGGCCTTATATAAGATTGGAAAAGGCAGACCGCCAATGGTTCCCGAGTCACTCTCTGAAGATGCTCGGGATTTCATACTGCAGTGCCTACAAGTTAATCCGCAGGACCGTCCTACTGCTGCTGATCTTTCAAATCACTCATTTGTGAAAAAATCAGATTCCAGTGCATATTCTTACAACAGGACAGGCGGAAGGATTTGA | 1581 | 48.51 | MHRLPPFFSPRNRRKAMDPRKVPGEPRLGRLNAAKNIDYDAPSSSSGSLHTRSMDPSSFRVKGLDGEFDRYCQILGLTGPEDFAIPMEAWEARKPRPSSDLPLNSTLHHPVEVSKEREQELCPRVNDSVRISVHISPPNTEFLELHTRRLATAGCSPRTGINGARPPLLKPPPFLRPPDVDHTCSNWDLLKTFAPLVDDQNQDHVPERIEPRPSRIGSCESFSTSNDDDSSSTTTEPANVSPNLRCKPMITSWIAGKRLGSGSFGLVYEAISQDGNFFAIKEVSLLDDDSQGRQSISQLQQEIALLSEFEHENIVQYYGTDTAPDGSKLYIFLELVSQGSLMSLYQRIHLMDSIVSAYTRQILSGLKYLHDQNVVHRDIKCANILVDVTGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVNRKGQGYGLPADIWSLGCTVLEMLTRKLPYSEFESPMQALYKIGKGRPPMVPESLSEDARDFILQCLQVNPQDRPTAADLSNHSFVKKSDSSAYSYNRTGGRI | 526 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32411447 | 32418632 | + | Sed0019759.2 | Sed01g3024 | 702328 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3024 | 526 | ProSitePatterns | Protein kinases ATP-binding region signature. | 259 | 281 | IPR017441 | GO:0005524(InterPro) | |
Sed01g3024 | 526 | PRINTS | Tyrosine kinase catalytic domain signature | 333 | 346 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3024 | 526 | PRINTS | Tyrosine kinase catalytic domain signature | 478 | 500 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3024 | 526 | PRINTS | Tyrosine kinase catalytic domain signature | 434 | 456 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3024 | 526 | PRINTS | Tyrosine kinase catalytic domain signature | 368 | 386 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3024 | 526 | ProSiteProfiles | Protein kinase domain profile. | 253 | 509 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3024 | 526 | MobiDBLite | consensus disorder prediction | 199 | 243 | - | - | |
Sed01g3024 | 526 | SMART | serkin_6 | 253 | 509 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3024 | 526 | SUPERFAMILY | Protein kinase-like (PK-like) | 252 | 515 | IPR011009 | - | |
Sed01g3024 | 526 | Gene3D | Transferase(Phosphotransferase) domain 1 | 252 | 522 | - | - | |
Sed01g3024 | 526 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Sed01g3024 | 526 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 374 | 386 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3024 | 526 | MobiDBLite | consensus disorder prediction | 217 | 241 | - | - | |
Sed01g3024 | 526 | FunFam | Mitogen-activated protein kinase 1, putative, expressed | 251 | 521 | - | - | |
Sed01g3024 | 526 | Pfam | Protein kinase domain | 256 | 509 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3024 | 526 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 148 | 513 | IPR050538 | - | |
Sed01g3024 | 526 | MobiDBLite | consensus disorder prediction | 38 | 55 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3024 | Sed-Chr1:32411447 | Sed03g0841 | Sed-Chr3:5091754 | 1.00E-220 | dispersed | |
Sed01g3023 | Sed-Chr1:32411447 | Sed01g3024 | Sed-Chr1:32411447 | 9.10E-307 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78689 | PF00069 | Pkinase | 2.10E-66 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3024 | K13414 | - | csv:101218538 | 758.059 |