Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3031 ATGGCCCAGAATGAAATTTTGAGCGTCCTGGACAGTGCAAAAACTCAACTCTATCACTTCACGGCTGTGGTGGTGGCCGGAATGGGTTTCTTCACCGATTCCTACGACCTGTTTTGCATCTCCCTGGTGACTAAACTCATCGGGCGCATTTACTACACGGTCCCGGGGTCGCCCACCCCCGGAACCCTCCCTCCGGCTGCCTCTGCTGCCGTCAACGGCGTGGCTCTGGCTGGCGCCCTGGCAGGCCAACTCTTCTTCGGTTGGCTCGGTGACAAGCTTGGTCGGAAGCGCGTGTACGGCCTCACCCTCATCCTCATGGTCGTCTGCTCCATTGCCTCCGGCCTCTCCTTCAGCAGCTCTCCCACTGCCGTCATTGCCACTCTCTGCTTCTTCCGGTTCTGGCTCGGCTTCGGCATTGGCGGGGACTACCCCTTATCCGCAACCATCATGGCAGAATACTCCAACAAGAAAACCCGGGGCGCCTTCATCGCCGCCGTGTTCGCAATGCAGGGCTTCGGAATTTTGGCCGGCGGAGCGGTGGGGATGGTGATGTCGTCCATCTTTAAATCCATGTTCCAGGCGGCGCCGTACGCGGTGGATCCGGCGAGATCGGTTCCCCCAGAAGCGGATTACGTTTGGAGAATTATATTAATGCTGGGGGCATTGCCGGCTGTGTTGAGTTACTACTGGCGGATGAAAATGCCGGAAACGCCGCGCTACACGGCGTTGATTGCGAAAGACGAGACCAAGGCCCGCAGCGACATGTCGAAAGTGCTGAGGGTGGAGTTGGAAGCCCAGGGAGGCACCCAGCAAATTCCGGATTCTTTTGGGCTTTTGAGCAAGACGTTTGTCCGTAGACACGGGGTTCATCTGTTAGGTACGGCCAGCACTTGGTTCCTTATCGACGTGGCATACTACAGCCAAAATCTGTTTCAAAAGGACATTTTCACGGCAGTGGGGTGGCTGCCTAAGGCCAACACCATGAGTGCTTTGGATGAGGTCTTTAAAATCGCCAAGGCTCAATCACTCATAGCCCTTTGTGGCACCCTCCCCGGCTACTGGGCCACCGTCTTGCTCATCGATCACCTGGGTCGCTTTTTTATCCAAGCCTCTGGGTTCTTCTTCATGACGGTTTTCATGTTTGCTCTTGCTATTCCTTACCATCATTGGATTCACAACCATGCGGGGTTTGTTGCCATGTACGGACTCACCTTTTTCTTTGCCAACTTTGGTCCTAATTGCACTACATTTGTTGTTCCCGCCGAGATTTTCCCGGCCAGGTTTCGATCCACTTGTCATGGAGTATCCGCCGCAGCCGGGAAGATGGGAGCCATTGTTGGGGCATTTGGGTTTCTGTATGCGGCCCAAAATCCGGACCCGGCCAACACGGATGCGGGTTACCCACCTGGAATTGGAATCAGGAATTCATTGATGATATTGGGAGGGGTTAATGTTGTTGGATTGCTTTTTACGTTTTTGGTTCCGGAATCCAAAGGAAAGTCTTTGGAAGAAATGTCTAAAGAGAATGAAGTTGTATAG 1539 53.93 MAQNEILSVLDSAKTQLYHFTAVVVAGMGFFTDSYDLFCISLVTKLIGRIYYTVPGSPTPGTLPPAASAAVNGVALAGALAGQLFFGWLGDKLGRKRVYGLTLILMVVCSIASGLSFSSSPTAVIATLCFFRFWLGFGIGGDYPLSATIMAEYSNKKTRGAFIAAVFAMQGFGILAGGAVGMVMSSIFKSMFQAAPYAVDPARSVPPEADYVWRIILMLGALPAVLSYYWRMKMPETPRYTALIAKDETKARSDMSKVLRVELEAQGGTQQIPDSFGLLSKTFVRRHGVHLLGTASTWFLIDVAYYSQNLFQKDIFTAVGWLPKANTMSALDEVFKIAKAQSLIALCGTLPGYWATVLLIDHLGRFFIQASGFFFMTVFMFALAIPYHHWIHNHAGFVAMYGLTFFFANFGPNCTTFVVPAEIFPARFRSTCHGVSAAAGKMGAIVGAFGFLYAAQNPDPANTDAGYPPGIGIRNSLMILGGVNVVGLLFTFLVPESKGKSLEEMSKENEVV 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33200100 33201638 - Sed0014806.1 Sed01g3031 702335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3031 512 FunFam Inorganic phosphate transporter 1-6 18 512 - -
Sed01g3031 512 ProSiteProfiles Major facilitator superfamily (MFS) profile. 22 499 IPR020846 GO:0022857(InterPro)
Sed01g3031 512 Pfam Sugar (and other) transporter 24 507 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed01g3031 512 NCBIfam phosphate:H+ symporter 9 508 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Sed01g3031 512 SUPERFAMILY MFS general substrate transporter 10 508 IPR036259 -
Sed01g3031 512 CDD MFS_PhT 23 498 - -
Sed01g3031 512 Gene3D MFS general substrate transporter like domains 18 512 IPR036259 -
Sed01g3031 512 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 13 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3031 Sed-Chr1:33200100 Sed04g1985 Sed-Chr4:34407701 1.10E-216 dispersed
Sed01g3031 Sed-Chr1:33200100 Sed05g0108 Sed-Chr5:655102 8.00E-223 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3031 K08176 - csv:101205342 825.083