Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3038 ATGCATTCTTTCTGCTGCGTTTCCCAAACCTCCCATTCCAAGCAACCGCCCTGTTCCATGCCGCCGGAACTTCTTTCTCCGGTTTTCCTCCCCGCCAGATCCGATCCCGCCACTCGAATTTCTCACAACCGGAGCGTTTGCAGCGACCCTGGGCGCCCGAACCACCGGAGCGTTTTTGCTGCTGAGATCGTTGCAAGGCATTCCTCCGCCAGGGAGCCGCCGGTGGGCGTCAAGATCAACGATATTGTCGGGAATGGTGTTTGTGGTATGCTTTATAAGTGGGTGAACTACGGCAAAGGATGGCGCCCCCGCTGGTTTGTGCTTCTCGATGGTGTTTTGTCCTACCATAAGATTCATGGACCTGACAAGATCGTTGTCAATGAGGAAACCGACAAAGGATCCAAAGTCATCGGCCAGGACTCGATGCGCCGGATTTCCCGGCATAGGAACGGCTTCTCTAATCAGACTATTCAGTTTCCTCTCAGGCGCAAGCCGTCTGGGGAAGTTCATCTCAAGGTTTCCTCAATTCGAGAGAATCGATCCGATGACAAGAGGTTTTCCATCTTCACTGGAACGAAGAGACTTCACTTACGGGCGGAGACCCGCGAGGATCGGTTGACATGGATGGATGCATTGCAAGCAGTGAAGGAACTGTTCCCAAGGATGTCCAACAGTGAGCTCATGGCGCCAATGGACCTCTTGTCTGTGTCGACAGACAGGATTAGACAGCGGCTACTAGAAGATGATGTTAGTGAAACAGCCATTCAGGACACCGAAAATATCATGAAGACTGAGTTTGCTGCATTGCAAAGCCAGCTTTTGTTGCTCAAGCAGAAGCAGTGGCAACTCATTGACACACTGCGGCACTTGGAGACAGAAAAGGTTGACTTGGAGAATACAGTAGTTGATGAGAGCCAGAGGCAGTCAAATGAGCCTGGGGCTTTGCCTAATCTGCTGGAAAAGTACAGCGATGCAAGTGCAACTGAATCTGATGATGATCATGAGAGAGTTGGTGCTGCAGAGGAAGAAACAGATGATGATGATGAGAACACATTTTTTGACACTCGAGATTTTTTATCATCAAGTTCGTACAAAAGTAATGGATCTGATTATATGATATCATCTTTTTCTTCCGATGATGAAGCCCTTTGTACGGTCGATTCCGAGGAAGCAGTGGATCCATCAATTAGATCGTTTGGAACTAACTATCCTTACATTAAGCGACGCAAGAAATTACCTGATCCAATTGAAAAGGAGAAGGGTGTCAGTCTTTGGTCAATGATTAAAGACAACATTGGAAAAGATCTTACTAAAGTTTGTCTTCCTGTTTACTTCAATGAGCCTCTTTCTTCCTTGCAGAAGTGTTTTGAAGATTTAGAATATTCTTACCTTCTTGATCGAGCATATGAATGGGGAAGAAGGGGTGATAGCCTCATGAGAATTCTTAACGTAGCTGCGTTTGCTGTATCCGGATATGCTTCAACAGAAGGAAGAATTTGCAAACCATTTAACCCACTGTTAGGGGAAACTTATGAGGCTGACTATCCAGATAAAGGTCTCAAGTTTTTCTCCGAGAAGGTAAGCCATCATCCAGTGGTAGTTGCATGCCATTGTGAAGGTAAAGGGTGGAGATTTTGGGGGGACAGCAATTTGAAGAGTAAATTTTGGGGTCGGTCAATTCAACTTGATCCTGTTGGTTTGTTAACATTGGAATTTGATGATGGAGAAGTCTATCAATGGAGTAAGGTGACAACGTCAATTTACAACCTGATACTGGGAAAGCTGTACTGTGATCATTATGGTACAATGCGTATACAGGGAAATCGTGAATACTCGTGTAAGCTAAAATTCAAGGAGCAGTCCATTATTGACCGAAATCCGCACCAGGTGCATGGTATAGTTCAAGATAAAACTGGAAAGACGGTGGCTACATTATTTGGAAAATGGGATGAGAGTATGCATTATGTGAATGGGGAATATTCTCTAAAGGGAAAAGGATTTGATTCTTTATCCGAAGCTCACCTACTCTGGAAACGAAGCACGCCACCAAAAGTGTCTACTAGATGCAACTTCACACGTTTTGCTACGACTTTGAATGAGCTGACACCAGGCTTGAAGGAAAAATTACCTCCTACAGATTCGAGGCTCAGACCTGATCAGAGGCATTTAGAAAATGGACAATACGAAATGGCAAACTCAGAAAAGTTGCGTTTGGAGCAGCGCCAACGGCAGGCTCGGAAGATGCAAGAGCGAGGTTGGAAACCAAGGTGGTTTACCAAGGACAAGGGAACTGATTCATATCGCTACATTGGCGGGTACTGGGAGGCTAGAGAAGAGGGCAAATGGGACTCATGCCCTGATATATTTGGCCAGATTCATACCGATCCGCAACTCGAGTGA 2400 45.83 MHSFCCVSQTSHSKQPPCSMPPELLSPVFLPARSDPATRISHNRSVCSDPGRPNHRSVFAAEIVARHSSAREPPVGVKINDIVGNGVCGMLYKWVNYGKGWRPRWFVLLDGVLSYHKIHGPDKIVVNEETDKGSKVIGQDSMRRISRHRNGFSNQTIQFPLRRKPSGEVHLKVSSIRENRSDDKRFSIFTGTKRLHLRAETREDRLTWMDALQAVKELFPRMSNSELMAPMDLLSVSTDRIRQRLLEDDVSETAIQDTENIMKTEFAALQSQLLLLKQKQWQLIDTLRHLETEKVDLENTVVDESQRQSNEPGALPNLLEKYSDASATESDDDHERVGAAEEETDDDDENTFFDTRDFLSSSSYKSNGSDYMISSFSSDDEALCTVDSEEAVDPSIRSFGTNYPYIKRRKKLPDPIEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAYEWGRRGDSLMRILNVAAFAVSGYASTEGRICKPFNPLLGETYEADYPDKGLKFFSEKVSHHPVVVACHCEGKGWRFWGDSNLKSKFWGRSIQLDPVGLLTLEFDDGEVYQWSKVTTSIYNLILGKLYCDHYGTMRIQGNREYSCKLKFKEQSIIDRNPHQVHGIVQDKTGKTVATLFGKWDESMHYVNGEYSLKGKGFDSLSEAHLLWKRSTPPKVSTRCNFTRFATTLNELTPGLKEKLPPTDSRLRPDQRHLENGQYEMANSEKLRLEQRQRQARKMQERGWKPRWFTKDKGTDSYRYIGGYWEAREEGKWDSCPDIFGQIHTDPQLE 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33469366 33480172 - Sed0002623.2 Sed01g3038 702342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3038 799 Coils Coil 287 307 - -
Sed01g3038 799 Gene3D - 509 684 - -
Sed01g3038 799 SMART PH_update 85 219 IPR001849 -
Sed01g3038 799 MobiDBLite consensus disorder prediction 710 724 - -
Sed01g3038 799 FunFam oxysterol-binding protein-related protein 1D isoform X1 509 681 - -
Sed01g3038 799 Coils Coil 728 751 - -
Sed01g3038 799 SUPERFAMILY PH domain-like 88 223 - -
Sed01g3038 799 FunFam Oxysterol-binding protein-related protein 2A 720 791 - -
Sed01g3038 799 Pfam Oxysterol-binding protein 423 778 IPR000648 GO:0008289(InterPro)
Sed01g3038 799 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 93 765 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
Sed01g3038 799 ProSiteProfiles PH domain profile. 84 217 IPR001849 -
Sed01g3038 799 Gene3D - 720 783 - -
Sed01g3038 799 SUPERFAMILY Oxysterol-binding protein-like 418 792 IPR037239 -
Sed01g3038 799 MobiDBLite consensus disorder prediction 324 353 - -
Sed01g3038 799 MobiDBLite consensus disorder prediction 703 745 - -
Sed01g3038 799 Gene3D - 85 219 IPR011993 -
Sed01g3038 799 MobiDBLite consensus disorder prediction 338 352 - -
Sed01g3038 799 CDD PH_ORP_plant 87 224 - -
Sed01g3038 799 Pfam Pleckstrin homology domain 88 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3038 K20456 - - csv:101214552 1408.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3038 Sed-Chr1:33469366 Sed03g0830 Sed-Chr3:4959624 0.00E+00 dispersed
Sed01g3037 Sed-Chr1:33469366 Sed01g3038 Sed-Chr1:33469366 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g595 . . . . . . . Bma15g00230 . . . . . . Sed01g3038 . Cpe01g01580 Bhi07g01839 Tan04g0129 Cmetu09g0131 Lac13g0113 Hepe10g1564 . . Cla05g02620 Cam05g2807 Cec05g2843 Cco05g2875 Clacu05g2811 Cmu05g2659 Cre05g2775 Cone13ag1096 Cone19ag1086 . . Lsi04g00633 Csa05g02254 Chy10g00824 Cme10g00607 Blo06g00836 . . . . . . . . . . Cma04g01792 . Car04g01807 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004129 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 2 44