Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3040 ATGGCATTTGCCATGGCCAAATCCAAACCTCATCAGAGAAAGCTCATCAGACAGAATCACAAAAACCAGAAACCAAAGCCACCATCTTGGGCAGTTGTAAGAGGAATATTCAGTTGCAAATACCTGCAACCAGACAAACAACAACAACAACTGCTGGGCAAAGCAACAAAAGAAGAAGAGAACAGCAAACATTGTAAGAAAATGAAGTGTTCTGGTTCTCTCTGTAGCAACACCAAAGTAATACACAAGCTCGAAGCTGCAACCTCGCCCGAAATTCGCAAGAAAAGGGCATTGGCTTCCATGGCTTCCACTTCAAGTAGATCCACCAACAAAGCTCCTCCTTGGAAAGAACAAAATAATAATAGTAATAGTGGTGTTGTATCAGCCACATGTTCCTCCTTATCTGCATCATCTTCTTCCAATTCCTCCAATGGTACTGCCTCTTTCAGAGGAATGCCTTTCAGGAAATTCTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTCTTGGAATCACTAGAGACCCTTCTCTCAGAGCAACCATTTTCCCTTGTCCTCAATGTGGTGAGATTTTTATGAAATCTGAAACTTTAGACCTTCACCAGACTGTTACACATGCAGTATCTGAGCTTGGTCCTGGAGACACGAGCAAGAACATAGTGGAAATCATATTCCAGTCGAGCTGGCTGAAAAAGCAAACCCCAATTTGCAAAATCGAAAGGATTCTCAAAGTCCAGAACACAGCAAAAACCATTTTGAAATTCGAGGAATACAGGGACTCCATTAAAACAAAAGCCACAAAGCTTCCAAAGAAGCATCCACGTTGCATAGCAGATGGCAACGAACTCCTAAGGTTCCACTGCACAACCTTGGGCTGTTCATTGGGGCAAAATGGATCCTCAAATCTTTGCAGTTCAAAGCCACAATGCAATGTGTGTAGCATAATCAAGAACGGGTTCGACAAGGTGGGCGCAGAGGGGGGCATTCTAACGACGGAGACAAGCGGAAAGGCTCACGACAGCTCCGGGATATGGTTGGAGGGCGATAACAAAAGGGCAATGCTGGTTTGCCGAGTAATAGCTGGGAGGGTGAAGAAGAGTTCAGAAGGGAGTATTATGGAGGATTATGACTCCTTGGCTGGAGCTGCGGGAATGTATTCCAATTTAGATAAGTTATACGTGTTCAGTCCCAAGGCAATTTTGCCTTGTTTTGTTGTCATTTATGGTTTAGGATTTTAA 1242 43.56 MAFAMAKSKPHQRKLIRQNHKNQKPKPPSWAVVRGIFSCKYLQPDKQQQQLLGKATKEEENSKHCKKMKCSGSLCSNTKVIHKLEAATSPEIRKKRALASMASTSSRSTNKAPPWKEQNNNSNSGVVSATCSSLSASSSSNSSNGTASFRGMPFRKFYGCYECKMVIDPVLGITRDPSLRATIFPCPQCGEIFMKSETLDLHQTVTHAVSELGPGDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTAKTILKFEEYRDSIKTKATKLPKKHPRCIADGNELLRFHCTTLGCSLGQNGSSNLCSSKPQCNVCSIIKNGFDKVGAEGGILTTETSGKAHDSSGIWLEGDNKRAMLVCRVIAGRVKKSSEGSIMEDYDSLAGAAGMYSNLDKLYVFSPKAILPCFVVIYGLGF 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34328683 34331205 + Sed0014479.1 Sed01g3040 702344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3040 413 MobiDBLite consensus disorder prediction 95 126 - -
Sed01g3040 413 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 29 409 - -
Sed01g3040 413 SUPERFAMILY ADP-ribosylation 209 410 - -
Sed01g3040 413 Gene3D - 208 410 - -
Sed01g3040 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 212 IPR013087 -
Sed01g3040 413 MobiDBLite consensus disorder prediction 1 28 - -
Sed01g3040 413 ProSitePatterns Zinc finger C2H2 type domain signature. 186 207 IPR013087 -
Sed01g3040 413 MobiDBLite consensus disorder prediction 99 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3040 Sed-Chr1:34328683 Sed13g1577 Sed-Chr13:20939216 6.90E-84 dispersed
Sed04g3174 Sed-Chr4:42478358 Sed01g3040 Sed-Chr1:34328683 4.10E-58 transposed
Sed01g3040 Sed-Chr1:34328683 Sed03g0822 Sed-Chr3:4918291 8.60E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37336 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3040 - - - 0.0