Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3065 ATGGCTTATGGTAGTTCTAGATCTGTAAGATTCCAAGATGATTTCGAGTCATCTACCCTGCCTACGATGAGTGGTGGTGGCGTGAAGAAGATCATATACAACATTGATGGCACACAAATACCAGATTCGAGCAGCAAGAGAACCGAGGCTTGTGGAAAGTCTGGAAGATCCCTGCGAGCTAAAGTTTTGTCTAGAGTTTTCTCTGAGGATTACGAAAGAGTGCAGAGAAAAATATTGGATCCTAGGGGACAAGTCATACGGCGATGGAATAAGATATTTTTAGTAGCTTGTTTAGTTTCTTTGTTTGTTGACCCTCTTTTTTTTTACTTGCCTGCGGTTCGGGATAAGGTCTGCATCGACATAGGAGTAGGTCTTGAAGTTGTCCTCACAATTATAAGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTCCGTACATCTTATGTTGCGCCCTCTTCTCGGGTATTCGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATAAGGTATCTACACCATGGTTTCTGGATTGATTTCATTGCAGCCCTGCCAGTTCCTCAGGTTCTGATCTGGATTGTCATCCCCAACCTTAGTGGTTCAACAATGACAAACACCAAGAACTTCCTAAGGTTCTTTCTCATATTTCAGTACCTCCCAAGGCTTTATCTCATGTTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCAGGAGCTGCTTATAACCTGATCCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGTTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGTTGGAGAAGACTTTGTAAGGTTGACAAATCTTGTAATAATGGATTCTTCGACTGTCATAAAGTCGACGACCCTCGAAGGGACTCATGGTTTAGTACTAGCAATATTAAAAATTCATGCAATCCAAATGATCCCTTTTATCAATTTGGTATATATGGTGATGCAATCACTTTCCATGTCACAACCTCGTCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTAAAAAATCTAAGTTCCTTGGGTCAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATAATTGTTGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGAAATATGCAGAAATACCTCCAATCGACAACTGTTCGGTTAGAAGAGTGGAGAATAAGGAGGACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTTAGACAATCTGTCCGCAGATATGATCAATACAAGTGGGTAGCAACTCGAGGAGTTGATGAAGAAGCTCTGCTTAGAAGCCTTCCGTTGGATCTTCGAAGAGACATAAAGCGTCACCTTTGCCTCGACCTCGTGCGAAGGGTTCCATTGTTTGATCAAATGGATGAACGAATGCTAGATGCAATATGCGAGAGACTTAAACCGGCTTTGAGCACAGAAGGAACATTTCTCGTGCGAGAAGGTGATCCAGTCAATGAAATGCTATTCATTATTAGAGGTCATCTCGATTCATATACCACTAATGGCGGCAGAACTGGTTTTTTCAACTGTTGTCGTATCGGCCCGGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTGGACCCTTGTCCAAGTGTTGCACTTCCTTCTTCCACTCGCACAGTCAAAGCTATCTCTGAAGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTTAGAAGACTCCATAGCAAACAACTTAGACACAAGTTTCGATTCTACTCGCATCAATGGCGAACATGGGCTGCGTGCTTTGTTCAAGCAGCATGGCGGCGATATAAGAGACGCAAGGAAAGAGATGAGCTCAGGGCAAGGAAGAGCTATCAGATTTCCAAGCTCCAGCCCCCACTTTCACCATCAACTGCATCAAACATAGATAACATTGGAAGGGGGATGATGAATAAGCGTTCTGTGTCAGATGCTGGGGTTGTAAGCTCGTTGCAGAAGCCAGAAGAGCCCGACTTCTCTCTTGTTGAGGAATGTAGAAGCTAA 2103 43.13 MAYGSSRSVRFQDDFESSTLPTMSGGGVKKIIYNIDGTQIPDSSSKRTEACGKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPAVRDKVCIDIGVGLEVVLTIIRSIADVFYTIQIFIKFRTSYVAPSSRVFGRGELVIDPCKIAIRYLHHGFWIDFIAALPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLYLMFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCKVDKSCNNGFFDCHKVDDPRRDSWFSTSNIKNSCNPNDPFYQFGIYGDAITFHVTTSSFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEALLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNCCRIGPGDFCGEELLTWALDPCPSVALPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERDELRARKSYQISKLQPPLSPSTASNIDNIGRGMMNKRSVSDAGVVSSLQKPEEPDFSLVEECRS 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38354320 38358945 + Sed0027471.1 Sed01g3065 702369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3065 700 ProSiteProfiles cAMP/cGMP binding motif profile. 480 584 IPR000595 -
Sed01g3065 700 MobiDBLite consensus disorder prediction 649 667 - -
Sed01g3065 700 Gene3D Jelly Rolls 478 598 IPR014710 -
Sed01g3065 700 SUPERFAMILY cAMP-binding domain-like 410 606 IPR018490 -
Sed01g3065 700 Pfam Ion transport protein 88 407 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3065 700 CDD CAP_ED 480 611 IPR000595 -
Sed01g3065 700 Gene3D - 87 404 - -
Sed01g3065 700 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Sed01g3065 700 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
Sed01g3065 700 SMART cnmp_10 480 611 IPR000595 -
Sed01g3065 700 Gene3D Helix hairpin bin 407 471 - -
Sed01g3065 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 57 646 - -
Sed01g3065 700 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g3065 700 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g3065 700 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g3065 700 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g3065 700 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g3065 700 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g3065 700 Pfam Cyclic nucleotide-binding domain 503 588 IPR000595 -
Sed01g3065 700 SUPERFAMILY Voltage-gated potassium channels 80 402 - -
Sed01g3065 700 MobiDBLite consensus disorder prediction 649 700 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3065 Sed-Chr1:38354320 Sed01g3067 Sed-Chr1:38354616 0.00E+00 dispersed
Sed01g3065 Sed-Chr1:38354320 Sed01g3066 Sed-Chr1:38354320 2.10E-290 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3065 K05391 - csv:101210775 1300.03