Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3066 ATGACAAACACCAAGAACTTCCTAAGGTTCTTTCTCATATTTCAGTACCTCCCAAGGCTTTATCTCATGTTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCAGGAGCTGCTTATAACCTGATCCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGTTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGTTGGAGAAGACTTTGTAAGGTTGACAAATCTTGTAATAATGGATTCTTCGACTGTCATAAAGTCGACGACCCTCGAAGGGACTCATGGTTTAGTACTAGCAATATTAAAAATTCATGCAATCCAAATGATCCCTTTTATCAATTTGGTATATATGGTGATGCAATCACTTTCCATGTCACAACCTCGTCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTAAAAAATCTAAGTTCCTTGGGTCAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATAATTGTTGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGAAATATGCAGAAATACCTCCAATCGACAACTGTTCGGTTAGAAGAGTGGAGAATAAGGAGGACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTTAGACAATCTGTCCGCAGATATGATCAATACAAGTGGGTAGCAACTCGAGGAGTTGATGAAGAAGCTCTGCTTAGAAGCCTTCCGTTGGATCTTCGAAGAGACATAAAGCGTCACCTTTGCCTCGACCTCGTGCGAAGGGTTCCATTGTTTGATCAAATGGATGAACGAATGCTAGATGCAATATGCGAGAGACTTAAACCGGCTTTGAGCACAGAAGGAACATTTCTCGTGCGAGAAGGTGATCCAGTCAATGAAATGCTATTCATTATTAGAGGTCATCTCGATTCATATACCACTAATGGCGGCAGAACTGGTTTTTTCAACTGTTGTCGTATCGGCCCGGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTGGACCCTTGTCCAAGTGTTGCACTTCCTTCTTCCACTCGCACAGTCAAAGCTATCTCTGAAGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTTAGAAGACTCCATAGCAAACAACTTAGACACAAGTTTCGATTCTACTCGCATCAATGGCGAACATGGGCTGCGTGCTTTGTTCAAGCAGCATGGCGGCGATATAAGAGACGCAAGGAAAGAGATGAGCTCAGGGCAAGGAAGAGCTATCAGATTTCCAAGCTCCAGCCCCCACTTTCACCATCAACTGCATCAAACATAGATAACATTGGAAGGGGGATGATGAATAAGCGTTCTGTGTCAGATGCTGGGGTTGTAAGCTCGTTGCAGAAGCCAGAAGAGCCCGACTTCTCTCTTGTTGAGGAATGTAGAAGCTAA 1482 43.59 MTNTKNFLRFFLIFQYLPRLYLMFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCKVDKSCNNGFFDCHKVDDPRRDSWFSTSNIKNSCNPNDPFYQFGIYGDAITFHVTTSSFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEALLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNCCRIGPGDFCGEELLTWALDPCPSVALPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERDELRARKSYQISKLQPPLSPSTASNIDNIGRGMMNKRSVSDAGVVSSLQKPEEPDFSLVEECRS 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 38354320 38358945 + Sed0027471.3 Sed01g3066 702370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3066 493 Pfam Ion transport protein 11 200 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g3066 493 Gene3D Jelly Rolls 271 391 IPR014710 -
Sed01g3066 493 Gene3D Helix hairpin bin 200 264 - -
Sed01g3066 493 CDD CAP_ED 273 404 IPR000595 -
Sed01g3066 493 FunFam Cyclic nucleotide-gated ion channel 1 271 389 - -
Sed01g3066 493 MobiDBLite consensus disorder prediction 442 460 - -
Sed01g3066 493 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 439 - -
Sed01g3066 493 FunFam Cyclic nucleotide-gated ion channel 1 200 264 - -
Sed01g3066 493 SUPERFAMILY Voltage-gated potassium channels 17 236 - -
Sed01g3066 493 SMART cnmp_10 273 404 IPR000595 -
Sed01g3066 493 ProSiteProfiles cAMP/cGMP binding motif profile. 273 377 IPR000595 -
Sed01g3066 493 Gene3D - 2 197 - -
Sed01g3066 493 MobiDBLite consensus disorder prediction 442 493 - -
Sed01g3066 493 Pfam Cyclic nucleotide-binding domain 296 381 IPR000595 -
Sed01g3066 493 SUPERFAMILY cAMP-binding domain-like 203 399 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3066 Sed-Chr1:38354320 Sed05g2841 Sed-Chr5:39547040 6.90E-256 dispersed
Sed01g3065 Sed-Chr1:38354320 Sed01g3066 Sed-Chr1:38354320 2.10E-290 tandem
Sed01g3066 Sed-Chr1:38354320 Sed01g3067 Sed-Chr1:38354616 2.50E-290 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3066 K05391 - csv:101210775 922.539