Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3080 ATGGACGAATTTGGGGTATTGACGGAAAGATTTGGATTGAAGCCGCAAGGAAAATCGGCTCCAATGGCCGCATCCAAGGCATCATCCGCTTCCTCAACCGCCTTCCCATCTCCTAATTCTGGCTTCAACGCCAGATCCTCCTTCGATTCTACTTTTGTTGATGCATCTTTTCAGAAGAACGCCAAATCCGACCGCTACGGAGGAGGGCTTGATGATTTCGGTGACTTTTTGGGGAGTGTCAACCAGTCAACCAAACGTTCGGGGAGTTCTGGAAGTGCTCCGTCTTCTTTTGATTACGATTCCATATTTTTTGGATCGAAGAATTCGGATCCAATGTATGATGATGTTTTTGGTGGGATTCCTGGATTCAAGAGCAAGAAGGAGGATCCGCTCGGGTCCTTCTCCTCCTCTATGAATCAGACCTCTCAAATCGATGATTTGTTTGGTGATTTTGGCGGCAATGTGCCCAAAACTACAATTCCGAAGCCGAACGCAATGAAAAAAGCTGCAGATACTAACGCCGCCCCTTTTGATGAATTGATTTCTGGCTTTGGCAATAGCAACTCTCGGATTAATAGAGCTAGCATGCTGCAGAAATCAACTTCTCATCCAGCTAAATCAACTTTCAGTTCAGCCAAAGATCCTTTCATAGATCTAGAATCAACTTCAATACCATCGTATAATTCGTCCGAGGCTTTCTCGGATCCACTGGAGGAAATGAGTAAGTTCAATAGTTTTGGAGGCAAAAAAGTTGGCAGCACGTTAAATTCTTCCCCACCATTCAGGGTTCCTCCAATACCAAAGCCAGGTCATAAGGCAGATAAAGTTCAGAGTTCCTCTTCCACTTCTCTTGATGAATTTGAGGACTTTGCAAGAGGAAAAGTCAATACCACTGCACGCACAGTGAATAGAAATGGTAAAGATGCACAAGCTGCAGGAGTAAATCATCAAAATACTGGAGACGACCTGGACTCCTTTTTCAACTTGGGTCCACGATCAAAGAGTGTTCCAAGGTCAAGAACAACAACTCCGGATCCTCTATTTGATGTTCCTAAATACAGTAAACCTTCTGAAATTCCGAAAGAAAAATCTTCAGCAGCCTCATTCAATGTAAAAAAATCTTCTTCCGCAGTAAATCTTGTGGATGATCTTACATCGGTTTTTGGAGATGCTCCTTTATTTGGACATTTTGAAGAAGTTGAGGGAGAGAGTGAAGAGAGAAGAAGAGCTAGATTGGGGCGTCTACAAAGGACTCAAGAGCGTGCAGCAAGAGCAGTGGCTGATTTGAATCAACGTGACTTTCAAACACAACACGAGCAAGAAGAGAAGCTTAGGATTGCCGAGTGTTCAGATGTTGCTATCAAGCGGTGGGCTGCAGGGAAGGAAGGCAACATACGTGCACTATTATCATCATTGCAAAATGTTCTCTGGTCCGGGTGTGGTTGGGAACCAGTTTCATTGACAGATATGATTACTTCTTCATCGGTAAAAAAAGTTTATAGGAAGGCAGTCTTGTGCATTCATCCGGATAAGGTTCAACAGAAGGGTGCCAGTATCGAACAGAAATATACTGCAGAGAAGGTTTTTGATACCCTTAAGGAAGCGTGGAATAAGTTCAGCAAAGAGGAACTTTAG 1635 43.61 MDEFGVLTERFGLKPQGKSAPMAASKASSASSTAFPSPNSGFNARSSFDSTFVDASFQKNAKSDRYGGGLDDFGDFLGSVNQSTKRSGSSGSAPSSFDYDSIFFGSKNSDPMYDDVFGGIPGFKSKKEDPLGSFSSSMNQTSQIDDLFGDFGGNVPKTTIPKPNAMKKAADTNAAPFDELISGFGNSNSRINRASMLQKSTSHPAKSTFSSAKDPFIDLESTSIPSYNSSEAFSDPLEEMSKFNSFGGKKVGSTLNSSPPFRVPPIPKPGHKADKVQSSSSTSLDEFEDFARGKVNTTARTVNRNGKDAQAAGVNHQNTGDDLDSFFNLGPRSKSVPRSRTTTPDPLFDVPKYSKPSEIPKEKSSAASFNVKKSSSAVNLVDDLTSVFGDAPLFGHFEEVEGESEERRRARLGRLQRTQERAARAVADLNQRDFQTQHEQEEKLRIAECSDVAIKRWAAGKEGNIRALLSSLQNVLWSGCGWEPVSLTDMITSSSVKKVYRKAVLCIHPDKVQQKGASIEQKYTAEKVFDTLKEAWNKFSKEEL 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41425528 41438804 - Sed0023790.1 Sed01g3080 702384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3080 544 ProSiteProfiles dnaJ domain profile. 480 544 IPR001623 -
Sed01g3080 544 Coils Coil 412 432 - -
Sed01g3080 544 MobiDBLite consensus disorder prediction 14 38 - -
Sed01g3080 544 MobiDBLite consensus disorder prediction 303 324 - -
Sed01g3080 544 MobiDBLite consensus disorder prediction 251 289 - -
Sed01g3080 544 MobiDBLite consensus disorder prediction 22 38 - -
Sed01g3080 544 Gene3D DnaJ domain 415 543 IPR036869 -
Sed01g3080 544 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 1 360 - GO:0005737(PANTHER)|GO:0030276(PANTHER)|GO:0031982(PANTHER)|GO:0043231(PANTHER)|GO:0072318(PANTHER)|GO:0072583(PANTHER)
Sed01g3080 544 FunFam putative tyrosine-protein phosphatase auxilin isoform X2 410 544 - -
Sed01g3080 544 SUPERFAMILY Chaperone J-domain 404 543 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3080 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3080 Sed-Chr1:41425528 Sed03g3046 Sed-Chr3:47295384 1.30E-16 dispersed
Sed01g3080 Sed-Chr1:41425528 Sed03g3045 Sed-Chr3:47295384 1.30E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g224 Blo01g01553 . . . . Bpe04g00208 . . Cmo04g02503 Cmo15g00664 . . . . Sed01g3080 . . Bhi04g01874 Tan11g1245 Cmetu03g1597 . Hepe02g2217 . Lcy10g1250 Cla08g00620 Cam08g1034 Cec08g0623 Cco08g0735 Clacu08g0744 . Cre08g0552 . . Cone17ag0822 . . . . Cme03g00497 . . . Bda13g01471 . Bpe14g00394 . Bma02g00207 . . . . . Car04g02309 Car15g00604 Cpe01g02071 . . . . . . . . . . . . . . . Lsi08g00460 . Chy03g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006624 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 2 2 38