Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3084 ATGAAAGCAAATGAAATCAACGAGTTTTCATTATTCAATTCTGAAAATAGAGGGAACGAAGAGAGAGAGTCGGTGAAAAGCTCAGCAAACTGTACATGGTGTTGTATGTATGGGTTTGGGTGGCACTTGGTCGTCCACCGCCCCGCCACCGCCGGCGCCGCCATGAATCTTTCTCTTCCGGCCACCGCGATCCATTCTTATTGCCCTCTCTCTCCTTCCTCTTGCAATATCAATCTCCGATTCCAACTGCACACATGGAACCCAATCAGGGGCCGGCTTAGCTTCGCTGTTTCTCTCAATTCTGAATTTCAGACATTTCCAATTTTTTGGATTGGTCCTGTTCCCGGCTATATTGCCGAAGTTGAGGCATATTGTAGAATCTTTACAACCCCTCAACGACTTCACTCTACTCTTTGGGAAAGTCCACTAGTTGAGGATAAAAGAGTGTCTATACTTGGATGCTTAGCATTACTTCTAAACAAAGGGCGGGAGGATAATTTAGATGCAACGGAGGATAATCTTCCTCCCCTAGCTTCCTATAGGAGTGAGATGAAAGGCTGTTGCGAAACCTTGCACGTTGCTCTTGAGAATTTTTTGATTCCTGGTGATGACCGGAGTTTGGATCTATGGAGGAGACTTCAGAGGCTGAAGAATGTTTGCTATGATTCTGGTTTTTTTAGAGGGGAGGATTATCCCTGCCATACATTGTTTGCCAATTGGAATCCTGTTTATCTACATAACTCCAATGGTGGTCAGGTAACAGAAGTAGGTCTGAAGTGGTTAATGGAGAGAGGATTTAAAACAATTGTTGATCTTCGGGCAGAGATAGTGAAGGATGTATTCTATAGTGCATCCTTACATGATGCTATTGCTTCTGTGGAAGTCAAAGTGATCAGAATTCCTGTTGAAGTGAGGACTGCGCCAACAGTGGATCAGGTTGAGAAGTTTGCATCACTGGTTTTAGATGACAGCAATGGGCTGATCTATCTTCATAGTAAGGAGGGTGCTTGGAGAACATCGGCCATGATATCCAGGTGGAGGCAATATGGGACTCGCAGAGGATCACAGTTTGTCTCTAATCAGACAAACGTTCCGTGCGATATTCCCCTTAGAGACACCTCTCCTGAATTGGCACATAATCAAAATGGAGTGGAAGAATCACTGGAAATTTCTACAACTGAAGAAAAATTTTCATGTGAAGAAGACAACCAATCTTTGCTGCTTGAAAGTGCTCGTCATAGTTCAATGAACAGAAAAAAGGATTTAGAAACTGATAAAGTTCGCCAGAATGTAAATGAAGCTTATAATGGATCTATTCCTGCACAAAATCAGACATCTTTAAGAGCAGTTCATAATGGGGAAGAGCGTTCATCTCATTTTAGCGTTGAAACTAACCATCTGAAAGCTCAGATTCCTCCATGCAATGGTTTCTCAAGAAAAGAAATGTCCAACTTTTTTAGAACCAAAAAGTTTTCTCCTCAACACTACATACATCATAAAATGAAAACAAATGAAAATTGGCCACTTTTTGTGGAGTTACTTGCGAGCAGAGTTCAAAGATTTAGTGTTGATAATAGGGATCTTAAATCTGAGCCGGTTGAAGCAGGAAATATTAATGGCAGCCCAAGTGTGAAAGGTACGTCCTCAAAGACCCATTATTTTTCTACTACGAAGATGGATTATGTGAATGGTGATAGTCATGTTTCTTCCAATCACGTTCTTAATGGTGATGGAGTAGATGAAAGGAGTAAACTTCAGTCTAATTCAGAAACAAATGGCTTTAAGAGCAATGGTCAAGCAACTTCAGTTTCTAGCCATGTTGACATGGAATCTGTGGAGGTAAATATGTGTGCTTTTGCCACTGGTGTTGTAAGGGTGCAGTCAAGAAGGAAAGAAGTGGTTTTAGTCCGAACAGATGGGTTCACATGTGCCAGAGAAAAAGTGATTGAATCCTCTTTGGCATTTACTCATCCTAGTACACAACAACAGATGCTTATGTGGAAATCCACTCCTAAGACTGTATTACTTCTAAAAAAGCTGGGTCAAGAGCTCATCGGAGAAGCTAAAGAGGTTAGAGTTCAGGTAGATAGCATCATCCGGGCCGGGTGCATAACGAACCTTGCATCCCCGACAGGGACGTACGAGATGGTGCTCCATCCCTGA 2163 42.21 MKANEINEFSLFNSENRGNEERESVKSSANCTWCCMYGFGWHLVVHRPATAGAAMNLSLPATAIHSYCPLSPSSCNINLRFQLHTWNPIRGRLSFAVSLNSEFQTFPIFWIGPVPGYIAEVEAYCRIFTTPQRLHSTLWESPLVEDKRVSILGCLALLLNKGREDNLDATEDNLPPLASYRSEMKGCCETLHVALENFLIPGDDRSLDLWRRLQRLKNVCYDSGFFRGEDYPCHTLFANWNPVYLHNSNGGQVTEVGLKWLMERGFKTIVDLRAEIVKDVFYSASLHDAIASVEVKVIRIPVEVRTAPTVDQVEKFASLVLDDSNGLIYLHSKEGAWRTSAMISRWRQYGTRRGSQFVSNQTNVPCDIPLRDTSPELAHNQNGVEESLEISTTEEKFSCEEDNQSLLLESARHSSMNRKKDLETDKVRQNVNEAYNGSIPAQNQTSLRAVHNGEERSSHFSVETNHLKAQIPPCNGFSRKEMSNFFRTKKFSPQHYIHHKMKTNENWPLFVELLASRVQRFSVDNRDLKSEPVEAGNINGSPSVKGTSSKTHYFSTTKMDYVNGDSHVSSNHVLNGDGVDERSKLQSNSETNGFKSNGQATSVSSHVDMESVEVNMCAFATGVVRVQSRRKEVVLVRTDGFTCAREKVIESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELIGEAKEVRVQVDSIIRAGCITNLASPTGTYEMVLHP 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41470915 41481512 - Sed0025958.1 Sed01g3084 702388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3084 720 MobiDBLite consensus disorder prediction 536 550 - -
Sed01g3084 720 MobiDBLite consensus disorder prediction 570 602 - -
Sed01g3084 720 Pfam DSP-PTPase phosphatase fused to NAD+ Kinase 232 356 - -
Sed01g3084 720 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 250 348 IPR029021 -
Sed01g3084 720 MobiDBLite consensus disorder prediction 531 550 - -
Sed01g3084 720 MobiDBLite consensus disorder prediction 581 602 - -
Sed01g3084 720 Gene3D Protein tyrosine phosphatase superfamily 236 361 IPR029021 -
Sed01g3084 720 PANTHER NAD KINASE 299 691 - GO:0003951(PANTHER)|GO:0006741(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3084 K00858 - - csv:101204002 832.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3084 Sed-Chr1:41470915 Sed03g0432 Sed-Chr3:2560907 8.20E-258 dispersed
Sed01g3084 Sed-Chr1:41470915 Sed03g0431 Sed-Chr3:2560907 8.20E-258 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g216 . . . . . . . . Cmo04g02505 Cmo15g00662 . . . . Sed01g3084 . . Bhi04g01869 Tan11g1240 Cmetu03g0963 . Hepe02g2213 . Lcy10g1253 Cla08g00622 Cam08g1036 Cec08g0626 Cco08g0737 Clacu08g0746 . Cre08g0554 Cone4ag1431 Cone7ag1504 . . . . . Cme03g00495 Blo17g00169 . . Bda13g01468 . Bpe14g00397 . Bma02g00204 . . . . . Car04g02311 Car15g00599 Cpe01g02074 . . . . . . . . . . . . . . . Lsi08g00462 . Chy03g00755 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007207 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37