Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3098 ATGGAAAATCAGCAGAAAGAAGCACAGATGAGTACGGCGGCGACGCCCTCCTTTGGCGGCGGAAGCAACCGCATAGCGGCGGATACCACCGGGTCTCCGGTCAACGCCGCCAAGCCTCAAAATCACCTACAAGAACAAAAAACCACCACCCATCAGAAACCTGGATGGAAAAAGTTCCTTTCACACGTTGGCCCTGGCTTCCTTGTCTCCTTGGCTTACCTTGATCCTGGCAACTTGGAAACCGACTTGCAGGCTGGAGCTAATCACGGATACGAGCTTTTGTGGGTGGTGCTCATCGGATTGGTATTTGCACTTATCATTCAGTCCCTGGCTGCAAATCTCGGCGTAAGCACGGGTAAACACCTTTCAGAAGTCTGCAAAGCAGAATATCCGAAATTTGTCAAGTACTGCCTTTGGTTGCTGGCTGAACTTGCTGTAATAGCGGCCGATATTCCAGAAGTGATAGGAACGGCATTTGCGCTGAATATTCTATTCCATATTCCGGTTTGGGCTGGAGTTCTTCTTACTGGTTTGAGCACCCTCTTGCTCCTTGGACTTCAGAGATATGGGGCGAGGAAGCTTGAATTGCTGATAGCAATATTAGTATTGGTAATGGCGGCATGTTTCTTCGGGGAAATGAGCTACGTTAAGCCACCGGCGTCGGGCGTTTTAGAAGGAATGTTTGTGCCTAAACTCAATGGCCAAAGTGCCACAGCCGACGCCATTGCTCTCCTCGGCGCTCTCGTTATGCCGCACAATCTATTTCTTCATTCGGCTCTGGTGCTGTCAAGGAAAGTTCCAAATTCCGTGAGTGGGATCAATGCGGCATGCAAGTACTTCTTGATCGAGAGTGGATTCGCATTGTTCATCGCGTTTTTAATCAACGTGGCGGTGGTTTCAGTTTCCGGCACCGTTTGTACCGTCGGCCGAATCTCCAAATCCACGGCCGATCAGTGCTCCGACATAACCCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCAAGCTCCACTATTTATGCCATTGCGTTGCTGGCCTCTGGCCAAAGCTCCAGCATCACCGGCACTTATGCCGGGCAGTTCATCATGCAGGGCTTTTTGGAGCTGAAGATGAAGACATGGGCCAGGAACCTGATGACAAGGTCCATTGCCATTGCGCCCAGCCTGGTTGTGTCCATTATGGGTGGACCTCAAGGAGCTGGACGTCTCATCATTATTGCTTCGATGATTCTCTCCTTTGAACTCCCCTTCGCTCTAATTCCGCTCCTCAAATTCAGCAGCAGCAAAACCAAGATGGGCCCCCACAAGAATTCCATTTACGTAAGCGCAACTTTCCCCCCTTTTTCATACTTACCCGCACTTTTATATTTACTCCGCCTTCCTCCAGATCATAGTAATCTCCTGGATATTGGGCCTAGCAATCGTCGGCATCAACATCTATTATCTAACCACAAGCTTCGTGGGCTGGCTAATCCACAACACTTTACCCAAACTTGCTAA 1509 49.83 MENQQKEAQMSTAATPSFGGGSNRIAADTTGSPVNAAKPQNHLQEQKTTTHQKPGWKKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGYELLWVVLIGLVFALIIQSLAANLGVSTGKHLSEVCKAEYPKFVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVLVMAACFFGEMSYVKPPASGVLEGMFVPKLNGQSATADAIALLGALVMPHNLFLHSALVLSRKVPNSVSGINAACKYFLIESGFALFIAFLINVAVVSVSGTVCTVGRISKSTADQCSDITLNSASFLLQNVLGKSSSTIYAIALLASGQSSSITGTYAGQFIMQGFLELKMKTWARNLMTRSIAIAPSLVVSIMGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSKTKMGPHKNSIYVSATFPPFSYLPALLYLLRLPPDHSNLLDIGPSNRRHQHLLSNHKLRGLANPQHFTQTC 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42187146 42190748 + Sed0006355.1 Sed01g3098 702402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3098 502 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 58 435 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 MobiDBLite consensus disorder prediction 1 54 - -
Sed01g3098 502 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 44 446 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 Hamap Divalent metal cation transporter MntH [mntH]. 46 448 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 PRINTS Natural resistance-associated macrophage protein signature 351 370 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 PRINTS Natural resistance-associated macrophage protein signature 138 164 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 PRINTS Natural resistance-associated macrophage protein signature 241 264 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 PRINTS Natural resistance-associated macrophage protein signature 411 430 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 PRINTS Natural resistance-associated macrophage protein signature 379 396 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Sed01g3098 502 NCBIfam Nramp family divalent metal transporter 64 432 - -
Sed01g3098 502 Pfam Natural resistance-associated macrophage protein-like 80 441 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3098 Sed-Chr1:42187146 Sed06g2052 Sed-Chr6:44610069 2.80E-148 dispersed
Sed01g3098 Sed-Chr1:42187146 Sed05g1398 Sed-Chr5:27237670 1.80E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3098 K21398 - csv:101219356 751.125