Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3102 ATGCACACATTCTCATCCACGCCCTTTCTTCAAATGTCGAAGCGGCTCAGAACAACTCCACCTTCCACTCCCTCCGCCAAGCCACCGCCGCCACCTCCAACTCCACAACTCTCCCGTTCCAAGGGCACCGCCGTCTCCCTCCGCCAACCCAAAAGAGGCCTAACCCTAACCCTCTCCAACTGGGTCCCTCTCAATCTCTCCAGATCCGACCTCTCTTTGCCCCTCACTTTCCCCACCGGCCAAACATTCCGGTGGAAACAAACCGCCGCTCTTCAGTTCACCGGCGTCGTCGGCCCCCACCTCATCTCTCTCAACCAACTCCCCAAGGCCCACGTTTCCTATTGCCTTCACTCTTCTTCTTCTTCTTCTGCCTCCGCCGCCGCCAGATCGGCGTTGCTTGATTTCCTTAACGCCGGCATCTCCCTCCGTGCCCTTTGGGAGGTTTTCTCCGCCGCTGATCCGACATTCCATGCCTTGGCTCGCCTTTTGGAGGGTGCCCGGGTTCTCAGGCAACACCCACTTGAGTGCTTGGTTCAGTTTTTGTGTTCTTCCAATAATAATATTGCCAGAATTACCAAAATGGTGGATTATATTTCTTCTCTCGGGAATTATTTGGGCAATGTTGGAGGTTTTGATTTCCATGAATTTCCCACTCTGGAGAGGTTGTCTTTGGTTTCTGAGGCTGAGCTTAGAGAGGCGGGCTTTGGTTACAGGGCTAAATATATAATTGGCACTATAAATGCTTTAGAAGCCAAACCTGGAGGAGGTGCAGAGTGGCTTTTGTCTCTTCGTGATTTGGATCTTGAAGAGGTGATTGATGCTCTTTCTACTTTGCCGGGCGTTGGTCCCAAGGTAGCGGCTTGTGTTGCTCTCTTTTCCCTCGATCAGCACCATGCCATTCCTGTTGACACACATGTTTGGCAGGTATGA 930 52.26 MHTFSSTPFLQMSKRLRTTPPSTPSAKPPPPPPTPQLSRSKGTAVSLRQPKRGLTLTLSNWVPLNLSRSDLSLPLTFPTGQTFRWKQTAALQFTGVVGPHLISLNQLPKAHVSYCLHSSSSSSASAAARSALLDFLNAGISLRALWEVFSAADPTFHALARLLEGARVLRQHPLECLVQFLCSSNNNIARITKMVDYISSLGNYLGNVGGFDFHEFPTLERLSLVSEAELREAGFGYRAKYIIGTINALEAKPGGGAEWLLSLRDLDLEEVIDALSTLPGVGPKVAACVALFSLDQHHAIPVDTHVWQV 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42323008 42325037 + Sed0022381.3 Sed01g3102 702406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3102 309 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g3102 309 FunFam N-glycosylase/DNA lyase 172 296 - -
Sed01g3102 309 Gene3D Hypothetical protein; domain 2 172 296 - -
Sed01g3102 309 SMART endo3end 182 309 IPR003265 GO:0006284(InterPro)
Sed01g3102 309 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 60 309 IPR052054 GO:0005634(PANTHER)|GO:0006285(PANTHER)|GO:0034039(PANTHER)
Sed01g3102 309 CDD ENDO3c 175 309 IPR003265 GO:0006284(InterPro)
Sed01g3102 309 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 64 177 IPR012904 GO:0003684(InterPro)|GO:0006289(InterPro)|GO:0008534(InterPro)
Sed01g3102 309 MobiDBLite consensus disorder prediction 1 49 - -
Sed01g3102 309 Pfam HhH-GPD superfamily base excision DNA repair protein 178 309 IPR003265 GO:0006284(InterPro)
Sed01g3102 309 SUPERFAMILY DNA-glycosylase 173 309 IPR011257 GO:0003824(InterPro)|GO:0006281(InterPro)
Sed01g3102 309 MobiDBLite consensus disorder prediction 22 37 - -
Sed01g3102 309 SUPERFAMILY TATA-box binding protein-like 60 171 - -
Sed01g3102 309 Gene3D - 48 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3102 K03660 - - csv:101219118 446.817
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3100 Sed-Chr1:42323008 Sed01g3102 Sed-Chr1:42323008 2.70E-170 dispersed
Sed01g3101 Sed-Chr1:42323008 Sed01g3102 Sed-Chr1:42323008 2.80E-170 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g236 . . . . . . . . . Cmo15g00669 . . . . Sed01g3102 . . Bhi04g01882 Tan11g1252 Cmetu03g0437 . Hepe02g2230 . Lcy10g1243 Cla08g00614 Cam08g1028 Cec08g0617 Cco08g0729 Clacu08g0738 . Cre08g0546 . . . . . . . Cme03g00519 . Blo18g00178 . Bda01g01453 Bpe02g01649 . Bma01g00806 . . . . . . . Car15g00609 . . . . . . . . . . . . . . . . Lsi08g00454 . Chy03g00766 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008522 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 35