Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3107 ATGGAAGACCAAGAGGATAAGCAACTTCCCCCAAGGATTTCCCTTGCTTATGTGGAACAGGTGAACACGGATTTCTTCAGGGCCTTGGCAATGCAGCAACAGGAGCATGAGAGGTCCTATACAATGCTTGAGACCATCGAAAGTGTTAATGAAGACGAAGACGAACGTTCAGATTCCAACACCAACAATGGTCTTGATGACACCAATGACTCCTTGCAAAGCCAAGAACTCCGTTCTCGATGGGGTTTTCTTGCAGACGATGAGGAGACTACCGATGAAAATGAAGATATTGATGGAGATGAAGAGGGGGATTTTGAGGATTTTGATTTGGATGAGTTAAGCTATGAAGAGCTGATTGCATTAGGGGAGTTCATTGGAGAAGAAAAGAGGGGTCTACCAATGAATGAAATACCTTCCTGCTTGCACTCAAGCAAGTATCGAACCATCGAAAACAGAAGCGGGATGGATCGGTGTGTGATATGTCAAGTTGAATATGAAGATGGTGAAGAACTTGCTGCTCTTCCTTGTGAGCATCCCTACCATTTAGAATGTATAAGCAAATGGCTTCAAATCAAAAGGGTTTGTCCAATATGTGGCACAGAAGTTTCATCCCCCAAGGCTTCCAAAAAGGCATAA 636 43.71 MEDQEDKQLPPRISLAYVEQVNTDFFRALAMQQQEHERSYTMLETIESVNEDEDERSDSNTNNGLDDTNDSLQSQELRSRWGFLADDEETTDENEDIDGDEEGDFEDFDLDELSYEELIALGEFIGEEKRGLPMNEIPSCLHSSKYRTIENRSGMDRCVICQVEYEDGEELAALPCEHPYHLECISKWLQIKRVCPICGTEVSSPKASKKA 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42415180 42416081 + Sed0006549.1 Sed01g3107 702411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3107 211 SMART ring_2 158 198 IPR001841 -
Sed01g3107 211 MobiDBLite consensus disorder prediction 88 105 - -
Sed01g3107 211 FunFam E3 ubiquitin ligase BIG BROTHER-related 124 205 - -
Sed01g3107 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 208 IPR013083 -
Sed01g3107 211 MobiDBLite consensus disorder prediction 62 78 - -
Sed01g3107 211 MobiDBLite consensus disorder prediction 33 105 - -
Sed01g3107 211 ProSiteProfiles Zinc finger RING-type profile. 158 198 IPR001841 -
Sed01g3107 211 SUPERFAMILY RING/U-box 157 205 - -
Sed01g3107 211 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 84 206 IPR043312 -
Sed01g3107 211 Pfam Ring finger domain 157 198 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3107 K19045 - - csv:101217935 293.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3107 Sed-Chr1:42415180 Sed04g2780 Sed-Chr4:39849494 3.40E-26 dispersed
Sed01g3107 Sed-Chr1:42415180 Sed03g0422 Sed-Chr3:2513881 4.60E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g241 . . . . . . . . Cmo04g02489 . . . . . Sed01g3107 . . Bhi04g01887 Tan11g1255 Cmetu03g0877 . Hepe02g2233 . Lcy10g1240 Cla08g00611 Cam08g1025 Cec08g0614 Cco08g0726 Clacu08g0735 . Cre08g0543 . . . . . . . . . Blo18g00179 . Bda01g01452 Bpe02g01648 . . . . . . . . Car04g02303 . . . . . . . . . . . . . . . . . Lsi08g00451 . Chy03g00769 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007823 3 3 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 0 1 1 1 1 1 0 1 1 2 1 1 36