Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3111 ATGGCCCAGAATTCATTTCCAGTTTCTACTGAATCCATGGCCGCTACTGCTTTCGGAAGCGCCGCCGCCGCCGCCGCCGCATCCGCCACTCGTTTCCTCTCCTCAGCCGCCACACCTACTCTGCCCCTCTCTTCACGCTCTTCGTTCAAGTCCCTCCGATCGTCTCCTCACATTTCTCCTCTTTTTCTCAATCAGGGAAGGCCGCGTTCTCGTGTATCGACTACAGCATTCGATGCGGCGTCTAATACCAAATGCTCTGCATCCGACGCCCAGCAGTTGAAGAGTGCTAAAGAAGATATCAAGGAGCTTCTCAACACCACTTTCTGCCATCCTATTTTGGTACGCCTGGGTTGGCACGATGCTGGAACTTACAATAAAAATATTGACGAATGGCCACGCAGAGGTGGAGCTAATGGAAGTTTAAGATTTGATGTCGAGCTGGGACATGGCGCTAATGCTGGTCTTGTTAATGCCTTGAAACTCATTGAGCCTATCAAAAAGAAGTACTCTAACGTTACATATGCGGACCTATTTCAGCTGGCCAGTGCTACAGCCATCGAGGAGGCTGGGGGACCCAAAATCCCCATGAAGTATGGAAGGGTGGATGTTGTGGGGCCAGAGCAATGCCCTGAGGAGGGGAGGCTTCCTGATGCTGGCCCTCCATCACCTGCTGCTCACCTACGAGAAGTTTTCTACAGAATGGGGTTGAATGACAAGGAAATAGTTGCATTATCTGGGGCACACACGTTGGGGAGATCTAGACCAGAACGCAGTGGCTGGGGCAAGCCAGAGACCAAATATACGAAAGATGGACTTGGTGCTCCTGGTGGACAATCCTGGACGGCACAATGGTTGAAGTTTGACAACTCATATTTTAAGGATATCAAAGAAAGGAGAGATGAAGATTTACTGGTGTTGCCAACTGATGCCGCTCTCTTTGAAGATCCATCATTCAAGGTATATTCTGAAAAATATGTTGAAGATCTTGAAGCCTTCTTCAAAGACTACGCTGAAGCTCATGCCAAACTTAGCAACCTTGGTGCTAAATTTGACCCTCCAGAGGGTATAGTGATCGATGATGCATCTTCAAAACCTGTTGGAGAGAAATTTGATGCCTCCAAATATTCATACGGAAAGAGAGAGCTATCAGAGTCGATGAAGCAGAAGATTCGGGCAGAATACGAAAGTTTTGGTGGAAGTCCAGACAAGCCTTTACCAACAAACTACTTCCTAAATATCATACTTGTGATTGCTGTTTTGGCAATCTTGACATCTCTGCTTGGAAACTGA 1290 47.67 MAQNSFPVSTESMAATAFGSAAAAAAASATRFLSSAATPTLPLSSRSSFKSLRSSPHISPLFLNQGRPRSRVSTTAFDAASNTKCSASDAQQLKSAKEDIKELLNTTFCHPILVRLGWHDAGTYNKNIDEWPRRGGANGSLRFDVELGHGANAGLVNALKLIEPIKKKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVVGPEQCPEEGRLPDAGPPSPAAHLREVFYRMGLNDKEIVALSGAHTLGRSRPERSGWGKPETKYTKDGLGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYSEKYVEDLEAFFKDYAEAHAKLSNLGAKFDPPEGIVIDDASSKPVGEKFDASKYSYGKRELSESMKQKIRAEYESFGGSPDKPLPTNYFLNIILVIAVLAILTSLLGN 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42466491 42484470 + Sed0001909.1 Sed01g3111 702415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3111 429 MobiDBLite consensus disorder prediction 252 273 - -
Sed01g3111 429 CDD ascorbate_peroxidase 87 351 - -
Sed01g3111 429 PRINTS Haem peroxidase superfamily signature 280 295 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PRINTS Haem peroxidase superfamily signature 110 124 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PRINTS Haem peroxidase superfamily signature 190 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PRINTS Haem peroxidase superfamily signature 172 189 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 SUPERFAMILY Heme-dependent peroxidases 88 349 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 53 355 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0034599(PANTHER)|GO:0034599(InterPro)|GO:0042744(PANTHER)
Sed01g3111 429 Pfam Peroxidase 97 328 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PRINTS Plant ascorbate peroxidase signature 309 333 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PRINTS Plant ascorbate peroxidase signature 110 125 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PRINTS Plant ascorbate peroxidase signature 171 189 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 PRINTS Plant ascorbate peroxidase signature 190 202 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3111 429 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 96 220 - -
Sed01g3111 429 FunFam L-ascorbate peroxidase T, chloroplastic 218 341 - -
Sed01g3111 429 ProSitePatterns Peroxidases proximal heme-ligand signature. 240 250 IPR019793 -
Sed01g3111 429 Gene3D Peroxidase, domain 2 218 341 - -
Sed01g3111 429 Gene3D - 96 349 - -
Sed01g3111 429 ProSiteProfiles Plant heme peroxidase family profile. 136 368 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3111 K00434 - - csv:101216755 683.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3111 Sed-Chr1:42466491 Sed03g0774 Sed-Chr3:4662414 9.50E-177 dispersed
Sed01g3111 Sed-Chr1:42466491 Sed03g0773 Sed-Chr3:4662414 9.50E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46