Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3116 ATGGAGTTTAAAGCAGCAGATGTGGCACAAATCCAACAACAAGTGCACCAGCATTTCCATGTGCTGGCAGTGGATGATAGCCTTATAGATAGAAAGCTTTTGGAGAAGCTCCTAACCATTTCTTCATGTGAAGTTACCTGCGTGGAGTCTGGAGACAAGGCTCTAAGGTATCTGGGTCTTCTTGAGGACCTCCACAAATTTTCTTCCCCACAGGAAGTGAAAGTGAACCTAATCATGACAGACTACTGTATGCCTGGGATGAGTGGATATGATCTACTGAAAACACTCAAGGGATCTTCACGGAAAGATATTCCTGTGGTTGTGATGTCTTCAGAGAACGAAGCTTCAAGAATCAACATGTGCCTGGAAGAAGGGGCAGAGGACTTCCTTTTGAAGCCCATTCAACTATCGGACGTGAAGAAGCTGGAGCCTCACCTTCAAAACTCCCTCACCCGTTCCTCTCCACAAATGAAGGAAGAAGATTCGGACGCCGAAAACAACGAATCCCCCCAAATGGGATAA 522 45.98 MEFKAADVAQIQQQVHQHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLEDLHKFSSPQEVKVNLIMTDYCMPGMSGYDLLKTLKGSSRKDIPVVVMSSENEASRINMCLEEGAEDFLLKPIQLSDVKKLEPHLQNSLTRSSPQMKEEDSDAENNESPQMG 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42895891 42899066 - Sed0016824.3 Sed01g3116 702420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3116 173 ProSiteProfiles Response regulatory domain profile. 20 147 IPR001789 GO:0000160(InterPro)
Sed01g3116 173 CDD REC_typeA_ARR 21 142 - -
Sed01g3116 173 Gene3D - 20 172 - -
Sed01g3116 173 SMART REC_2 19 143 IPR001789 GO:0000160(InterPro)
Sed01g3116 173 Pfam Response regulator receiver domain 21 140 IPR001789 GO:0000160(InterPro)
Sed01g3116 173 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 159 IPR045279 GO:0009736(InterPro)
Sed01g3116 173 SUPERFAMILY CheY-like 18 141 IPR011006 -
Sed01g3116 173 MobiDBLite consensus disorder prediction 144 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3116 Sed-Chr1:42895891 Sed01g3118 Sed-Chr1:42897882 5.10E-89 dispersed
Sed01g3116 Sed-Chr1:42895891 Sed01g3117 Sed-Chr1:42897882 3.40E-93 tandem
Sed01g3116 Sed-Chr1:42895891 Sed03g0778 Sed-Chr3:4680177 7.20E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37344 PF00072 Response_reg 5.70E-21 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3116 K14492 - csv:101216267 235.728