Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3117 | ATGGAGTTTAAAGCAGCAGATGTGGCACAAATCCAACAACAAGTGCACCAGCATTTCCATGTGCTGGCAGTGGATGATAGCCTTATAGATAGAAAGCTTTTGGAGAAGCTCCTAACCATTTCTTCATGTGAAGTTACCTGCGTGGAGTCTGGAGACAAGGCTCTAAGGTATCTGGGTCTTCTTGAGGACCTCCACAAATTTTCTTCCCCACAGGAAGTGAAAGTGAACCTAATCATGACAGACTACTGTATGCCTGGGATGAGTGGATATGATCTACTGAAAACACTCAAGGGATCTTCACGGAAAGATATTCCTGTGGTTGTGATGTCTTCAGAGAACGAAGCTTCAAGAATCAACATGTGCCTGGAAGAAGGGGCAGAGGACTTCCTTTTGAAGCCCATTCAACTATCGGACGTGAAGAAGCTGGAGCCTCACCTTCAAAACTCCCTCACCCGTTCCTCTCCACAAATGAAGGAAGAAGATTCGGACGCCGAAAACAACGAATCCCCCCAAATGGGATGTATGTAA | 528 | 45.83 | MEFKAADVAQIQQQVHQHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLEDLHKFSSPQEVKVNLIMTDYCMPGMSGYDLLKTLKGSSRKDIPVVVMSSENEASRINMCLEEGAEDFLLKPIQLSDVKKLEPHLQNSLTRSSPQMKEEDSDAENNESPQMGCM | 175 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 42897882 | 42899066 | - | Sed0016824.1 | Sed01g3117 | 702421 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3117 | 175 | ProSiteProfiles | Response regulatory domain profile. | 20 | 147 | IPR001789 | GO:0000160(InterPro) | |
Sed01g3117 | 175 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 15 | 164 | IPR045279 | GO:0009736(InterPro) | |
Sed01g3117 | 175 | CDD | REC_typeA_ARR | 21 | 142 | - | - | |
Sed01g3117 | 175 | MobiDBLite | consensus disorder prediction | 144 | 175 | - | - | |
Sed01g3117 | 175 | SUPERFAMILY | CheY-like | 18 | 141 | IPR011006 | - | |
Sed01g3117 | 175 | Pfam | Response regulator receiver domain | 21 | 140 | IPR001789 | GO:0000160(InterPro) | |
Sed01g3117 | 175 | SMART | REC_2 | 19 | 143 | IPR001789 | GO:0000160(InterPro) | |
Sed01g3117 | 175 | Gene3D | - | 20 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3117 | Sed-Chr1:42897882 | Sed03g0778 | Sed-Chr3:4680177 | 5.60E-67 | dispersed | |
Sed01g3116 | Sed-Chr1:42895891 | Sed01g3117 | Sed-Chr1:42897882 | 3.40E-93 | tandem | |
Sed01g3117 | Sed-Chr1:42897882 | Sed01g3118 | Sed-Chr1:42897882 | 9.40E-91 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37345 | PF00072 | Response_reg | 5.90E-21 | CL0304 | Sed | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3117 | K14492 | - | csv:101216267 | 235.728 |