Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3118 ATGGAGTTTAAAGCAGCAGATGTGGCACAAATCCAACAACAAGTGCACCAGCATTTCCATGTGCTGGCAGTGGATGATAGCCTTATAGATAGAAAGCTTTTGGAGAAGCTCCTAACCATTTCTTCATGTGAAGGTAAAATTGTAATTATTATAGTTTACCCGCCTTTACATCTTTTTTGTATAACTACTTTTTACCCATACCCAGCAGTTACCTGCGTGGAGTCTGGAGACAAGGCTCTAAGGTATCTGGGTCTTCTTGAGGACCTCCACAAATTTTCTTCCCCACAGGAAGTGAAAGTGAACCTAATCATGACAGACTACTGTATGCCTGGGATGAGTGGATATGATCTACTGAAAACACTCAAGGGATCTTCACGGAAAGATATTCCTGTGGTTGTGATGTCTTCAGAGAACGAAGCTTCAAGAATCAACATGTGCCTGGAAGAAGGGGCAGAGGACTTCCTTTTGAAGCCCATTCAACTATCGGACGTGAAGAAGCTGGAGCCTCACCTTCAAAACTCCCTCACCCGTTCCTCTCCACAAATGAAGGAAGAAGATTCGGACGCCGAAAACAACGAATCCCCCCAAATGGGATGTATGTAA 603 43.95 MEFKAADVAQIQQQVHQHFHVLAVDDSLIDRKLLEKLLTISSCEGKIVIIIVYPPLHLFCITTFYPYPAVTCVESGDKALRYLGLLEDLHKFSSPQEVKVNLIMTDYCMPGMSGYDLLKTLKGSSRKDIPVVVMSSENEASRINMCLEEGAEDFLLKPIQLSDVKKLEPHLQNSLTRSSPQMKEEDSDAENNESPQMGCM 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42897882 42899066 - Sed0016824.2 Sed01g3118 702422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3118 200 SMART REC_2 19 168 IPR001789 GO:0000160(InterPro)
Sed01g3118 200 SUPERFAMILY CheY-like 70 166 IPR011006 -
Sed01g3118 200 Pfam Response regulator receiver domain 96 165 IPR001789 GO:0000160(InterPro)
Sed01g3118 200 Gene3D - 20 197 - -
Sed01g3118 200 ProSiteProfiles Response regulatory domain profile. 20 172 IPR001789 GO:0000160(InterPro)
Sed01g3118 200 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 189 IPR045279 GO:0009736(InterPro)
Sed01g3118 200 MobiDBLite consensus disorder prediction 169 200 - -
Sed01g3118 200 CDD REC_typeA_ARR 21 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3118 K14492 - - csv:101216267 221.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3116 Sed-Chr1:42895891 Sed01g3118 Sed-Chr1:42897882 5.10E-89 dispersed
Sed01g3118 Sed-Chr1:42897882 Sed03g0778 Sed-Chr3:4680177 1.20E-62 dispersed
Sed01g3117 Sed-Chr1:42897882 Sed01g3118 Sed-Chr1:42897882 9.40E-91 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g251 Blo01g01297 . . . Bpe02g00640 . . Bma01g02073 Cmo04g02481 Cmo15g00681 . . . . Sed01g3118 . . Bhi04g01902 Tan11g1266 Cmetu03g2252 . . . Lcy10g1232 Cla08g00600 Cam08g1013 Cec08g0604 Cco08g0714 Clacu08g0726 . Cre08g0534 . . Cone17ag1286 Cone20ag0441 . Csa04g01951 . Cme03g00540 . . . . . . . . . . . . . Car04g02296 Car15g00618 Cpe01g02057 . . . . . . . . . . . . . . . Lsi08g00441 . Chy03g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000219 2 6 2 4 4 5 9 5 5 3 5 5 8 5 5 8 5 6 7 5 5 5 6 6 6 5 4 13 7 2 163
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37346 PF00072 Response_reg 9.40E-16 CL0304 Sed TR