Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3126 ATGGAAAAAAGAAAATGGCCATGGAAGAGAAAATCATCTGATAAGAGCCCTGGAGAAACTGAAAGTTCTGGTTCAATGTCATCTTATTCTGAGAGATTTTCGGATGAGCAGGATGCAGCCAAGTCATCTCCTAATAACGAGACTCAGTCGCCAGAAGTAACGTCAAAAGCAGTATATAAGGAGGACATTGATGATGATGATTCACCAAAACAAGAAGATGTCAGTGAGAGTGTAAAAGATCTCACCGATCGGCTATCAGCTGCTCTTTTGAATGTGAGGGCAAAAGAAGACATGGTAAAGCAGCATTCTAAAGTTTCCGAAGAAGCTATTGCAGGATGGGAAAAGGCAGAAAACGAAGTTGGACTTTTAAAACAGCAGCTTGGGACTACAGTTCAGCAAAAATCTGCATTGGAAGATCGAGTGAGCCACCTTGATGGGGCACTCAAAGAGTGTGTTAGGCAGCTTAGGCAGGGAAGGGAGGAGCAAGAACAGAAGATTCGTGACGCTGTGAAGCAAAAAACCCGGGATTGGGAGTCAACCAAGGTGGATCTTGAGAGGCAGCTCCTTGAGCTCCAGAGCAAAGCAGAAGCTGCTCAATCTCAATCTCCTAAATTTGATCCTAGCCTTGGCAAGAAGCTTGAGTCATTGAAAAGAGCAAATGCAGCCCTTAGGCATGAGCTTCATGCTCAATACAGGGAGTTAGAAGCCAGGACTATTGAGAGGGATTTGAGTACACAAACAGCCGAAACAGCCAGTAAGCATCATCTCGACAGCATAAAGAAAATGACCAAGCTCGAGGCTGAGTGTCGCAGGTTAAGAGTAATGTCATGCAAACCATCGTTTGTTCATGATTACAAATCCATAGCTGCTTCGACAATGTCAATCGAGTCACTCACTGACACTCAATCAGACAATGGGGATCAGCTTAATGCAGTGGATATTGATATAAGAAAAACCGAACGAAACAAATGTGAACCTAGTTGCTCAGACTCATGGGCTTCAACCTTATTGGTGGAACTTAATCAGCTAGGGAATGAAAAGGCTGTTGGCAATAATCTTCCTTCTTCCCTTGAACTTGAGCTCATGGATGATTTTCTTGAGATGGAGAGGCTTGCTTCGTTACCCGAAGCTGATACGGGAAAGTGTGACCAAGAACCAGAAGCTTCCTCTGGCTCAACTTCTGAAGAAAGTGCCATGAGAACTGAGCTTGAGACCTTGCGACATGAGAGATCTTTAATGGAAGAGAAGCTGGGTGAGATGGAAGAAGAAAAGATAAAACTTGAACTGAAACTAAAACAAATGGAAACGGAGAAGGATGAAATGGAAGAGAGGCTAGAGATGATGGAAATAGAAAGAGCTGAAGTGAATCAAATTTTAGCGAAGATGGAGACCGAGAAATCTGAATCGGGGCAGAAGTTAATGAAGATGGAAGCAGAGAAAGTTGAAATGGGAGAGAAACTAACGAAGTTAGAGGCAGAGAACAATGAACTGGAGACTGCTTTATCCCAGAGTCAGCATTCTGTTGACATTTCCCAATCCCAAATCAAAGAAACAGAATTGAAACTGGAAAAGTTACAGAATGAACTCACCATGGCAACTGAATCAAAGCTAAGAATTGAGTCTCAACTTATCAGCATGGAAGCAGAATCTCTGACCATGTCTGCAAAAGTTGGCATGTTAGAATCTGATATCCAAAAAGAGAGGGCTTCAGCATTGGCATTGACAGTCAAGTGTCAGGAGCTAGAAGAACAGCTTTCAATATTAAAACAGGATGAAAAACAAAGTGAAATCCCCAAAAATGAATTGAAGATAAAGCAGGAAGATCTAGCTGTAGCTGCTGGTAAACTTGCCGAGTGTCAAAAGACAATAGCTTCTCTTGGGAATCAGCTTAAATCTCTAGCAGCCCTTGAAGATTTTCTGATCGACACGACACAACTGCCAGAGTTCACAGCCAGTGAATCACTTAACATTACGAGAGATGGCGAGGTGCAATGCAAGCATTCAAACGGGACACTTTCACCCCAAGGAGATTCAGACTATAGTAAAGAAGTCGATGACAATTCTGAACCATCAATGAGTAAGAATGAAGACGACTCGCCCCCATCTTCGTCTTCTTCGTCAAATTCTTCATCTGTGATTGCTAATCATGTTGTCAGTTCCGAGAAAAATCGAAATGGTTTTGCAAAGTTTTTCTCTCGAACAAAGAGTGGAATAAAACTAGAAATTTAG 2229 42.35 MEKRKWPWKRKSSDKSPGETESSGSMSSYSERFSDEQDAAKSSPNNETQSPEVTSKAVYKEDIDDDDSPKQEDVSESVKDLTDRLSAALLNVRAKEDMVKQHSKVSEEAIAGWEKAENEVGLLKQQLGTTVQQKSALEDRVSHLDGALKECVRQLRQGREEQEQKIRDAVKQKTRDWESTKVDLERQLLELQSKAEAAQSQSPKFDPSLGKKLESLKRANAALRHELHAQYRELEARTIERDLSTQTAETASKHHLDSIKKMTKLEAECRRLRVMSCKPSFVHDYKSIAASTMSIESLTDTQSDNGDQLNAVDIDIRKTERNKCEPSCSDSWASTLLVELNQLGNEKAVGNNLPSSLELELMDDFLEMERLASLPEADTGKCDQEPEASSGSTSEESAMRTELETLRHERSLMEEKLGEMEEEKIKLELKLKQMETEKDEMEERLEMMEIERAEVNQILAKMETEKSESGQKLMKMEAEKVEMGEKLTKLEAENNELETALSQSQHSVDISQSQIKETELKLEKLQNELTMATESKLRIESQLISMEAESLTMSAKVGMLESDIQKERASALALTVKCQELEEQLSILKQDEKQSEIPKNELKIKQEDLAVAAGKLAECQKTIASLGNQLKSLAALEDFLIDTTQLPEFTASESLNITRDGEVQCKHSNGTLSPQGDSDYSKEVDDNSEPSMSKNEDDSPPSSSSSSNSSSVIANHVVSSEKNRNGFAKFFSRTKSGIKLEI 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43270556 43275347 - Sed0013030.1 Sed01g3126 702430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3126 742 Coils Coil 564 591 - -
Sed01g3126 742 MobiDBLite consensus disorder prediction 679 693 - -
Sed01g3126 742 Coils Coil 174 201 - -
Sed01g3126 742 SUPERFAMILY Tropomyosin 397 629 - -
Sed01g3126 742 MobiDBLite consensus disorder prediction 385 399 - -
Sed01g3126 742 MobiDBLite consensus disorder prediction 1 80 - -
Sed01g3126 742 Pfam Filament-like plant protein, long coiled-coil 464 635 IPR008587 -
Sed01g3126 742 Pfam Filament-like plant protein, long coiled-coil 209 275 IPR008587 -
Sed01g3126 742 Pfam Filament-like plant protein, long coiled-coil 95 202 IPR008587 -
Sed01g3126 742 Pfam Filament-like plant protein, long coiled-coil 326 393 IPR008587 -
Sed01g3126 742 MobiDBLite consensus disorder prediction 662 678 - -
Sed01g3126 742 Coils Coil 213 233 - -
Sed01g3126 742 MobiDBLite consensus disorder prediction 1 17 - -
Sed01g3126 742 MobiDBLite consensus disorder prediction 694 718 - -
Sed01g3126 742 MobiDBLite consensus disorder prediction 375 401 - -
Sed01g3126 742 Coils Coil 403 542 - -
Sed01g3126 742 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 480 - -
Sed01g3126 742 MobiDBLite consensus disorder prediction 662 718 - -
Sed01g3126 742 MobiDBLite consensus disorder prediction 18 55 - -
Sed01g3126 742 Coils Coil 152 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3126 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3126 Sed-Chr1:43270556 Sed13g1581 Sed-Chr13:21037246 3.60E-30 dispersed
Sed01g3126 Sed-Chr1:43270556 Sed03g0788 Sed-Chr3:4751382 1.40E-284 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47