Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3128 ATGGACGTGAATGGCAATATTGTGAGTAAGTTGAAGCCTTACTTTCTAGTGTTGTGCCTACAGTTTGGAACCGCAGGCATTTATATAATATCCATGGCCACTCTTAGCCATGGCATGAGTCGCTATGTGCTGATCGTGTATCGAAATTTTGTCGCCGTTCTCTTTCTCACTCCCTTCGCTCTATTCTTTGAAAGGAAAACAAGGCCAAAAATGACACTCTCCGTAGCCTTGCAAATCATGGTCCTAGGTTTTCTAGAGCCAATTGTGGATCAGGGGTTTGGTTATTTGGGAATGATGTACACGTCAGCAGCATTTACTTCAGCCATCATGAATGCTGTGCCTTCTGTTACCTTTATCATTGCAGTCATTTTTAGAATGGAGCGAGTAAATTTAAGACAAGCACGAGGGATAGCCAAGGTCATCGGAACTATAGTGACGCTCGCCGGAGCTTTGATTATGACACTTTACAAAGGCCCAATTCTCGATTTCTTTTGGACTCGAAAAACCAACCACCACGTTAACAGCAGCAGCGCTGCCACCAATCAGCACTGGGTTGCCGGGACTTTGTTCATCCTTCTTGCTTGTGTGGCTTGGTCTTGTTTCTATATATTACAAGGAATAGTTGGGTCAGGAATTGCATATTACTTCCAAGCATTGGTTATGAAGAGCAGAGGCCCTGTATTTGTGACAGCTTTCAACCCTTTATGTATGGTGGTTGTCACTGTATTATCCTCCATTATTCTGGCCGAAAAGATCCATCTAGGAAGCGTTATTGGAGCCATTATCATTGCAATTGGGCTTTATTCAGTTGTTTGGGGCAAAAGTAAGGATTATTCCACCGCTGCCAGCCACCCTGACAAGTCTAACGCCGCCGATCCAGAACTTCCAATTACAGCCTCTAAACTCCCCGCCGAACAAGCTGCAGATCACGATCTTCAACCTCCAAATGATAATTTTTAA 960 44.06 MDVNGNIVSKLKPYFLVLCLQFGTAGIYIISMATLSHGMSRYVLIVYRNFVAVLFLTPFALFFERKTRPKMTLSVALQIMVLGFLEPIVDQGFGYLGMMYTSAAFTSAIMNAVPSVTFIIAVIFRMERVNLRQARGIAKVIGTIVTLAGALIMTLYKGPILDFFWTRKTNHHVNSSSAATNQHWVAGTLFILLACVAWSCFYILQGIVGSGIAYYFQALVMKSRGPVFVTAFNPLCMVVVTVLSSIILAEKIHLGSVIGAIIIAIGLYSVVWGKSKDYSTAASHPDKSNAADPELPITASKLPAEQAADHDLQPPNDNF 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43824645 43856977 + Sed0027754.1 Sed01g3128 702432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3128 319 Pfam EamA-like transporter family 24 145 IPR000620 GO:0016020(InterPro)
Sed01g3128 319 Pfam EamA-like transporter family 166 271 IPR000620 GO:0016020(InterPro)
Sed01g3128 319 SUPERFAMILY Multidrug resistance efflux transporter EmrE 191 275 - -
Sed01g3128 319 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 147 - -
Sed01g3128 319 PANTHER WAT1-RELATED PROTEIN 16 205 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3128 Sed-Chr1:43824645 Sed05g2352 Sed-Chr5:35994836 1.10E-76 dispersed
Sed01g3128 Sed-Chr1:43824645 Sed03g0798 Sed-Chr3:4809533 6.10E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3128 - - - 0.0