Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3168 ATGACTACATTAGCCAGTACTTCAGAAATTGTTGAATTGGCAGAAGAATTTGAATCTGAGAAAGCTGGGACTAGTTACGTGCTAGATGTAGGGAAAAGGTTTTCTATAGAGGATGACATTAATAGTCTTTTTCAGGCAATTGATATCAGAACCGTGCGTAAGAGGTCAGGTCGGCAACGGGAAATGGGTAATGATGCTTTGCAAAAGAGTGCGATGAAGAGACCGATTCGAGTAGGTTCCTCTTACATGGCAGGGATTGGAATTTCTGAACCTGCAAGTTTAAAGCAGGCTTTGAGGGGCTTATGCATATCTCAGGCTGCAGAAATGGCTGCTACAAAGAGGTTAACAAGGTCTGTAGGTTCTCCCAGATTCTCTGAAGCAGGAACTATAAAAAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATAGATCGGTTGTGCCTGAAAATGAAAGCAAAGCCAATTTGCTAGAAATTTCCATTGTTTCAGAAAGAATTTCGTCAACTTTTAAAAGTACGATTCCTGAATTGTTGCATAAAACCGAGGCAAAAATATCAAACCAAGAAGCTGAGTCTTCTTCTCTTAAGGATACGCGAGTATCAGAAGATGCAAATGTAGATAAATTGATGTCAAAGGATCTTGTAGTCAATGCCGTTACCGAAATGACAAGTATGAAGGCATCTGATGAGGTGGGAAAACTTAAACCTCATTTCCATACTCCCCCTTGTGAGAAGGATCTGGCTATGAACAACATGGCTAATTCCTCAACTGAAGATTTGGCAAAACAAAAATCGGTGTTAGAAGAGAGGGAGGAGAGAGGTACTATGCGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTTAGGCCAAATAAATTAGCATTCAATAATTCACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGAACGTTTGATGTGTGCATAGTAACGGTTGGTACTGATTTGGGTTCCATAGAAGAAAAATTTGAGAACCAAATGCCTGAAAATGCACAGCATCATGAGAGTAAAGAGGAAGATAAAGGTTCTTATGTCTCTAGTAGCACAACTTTAGGTATTGAAGTAAGTTCAAGTATAGTAAACACAGAGTCTAGTAAACGTGATACATCTTTCAACTGCTTGAACAGGAACAGACCAACTATTATGCCATTTTATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGTTCTAAAAGTAGTATTGGTGAATGTAGCACTAGCCCAAGCATCAGTGGGGAAAGCATTATCAGTGGATCAAGTCGTAATGGAATTAGGCCTCACATGTCAAAGGATTTGAAATGGGAAGCTATCCACCATATTCAAGAGCAACATAAATGCTTAAGTATAAGAAACTTCAAGTTGTTAAGGAGACTTGGTCTTGGGGACATTGGAACTGTGTATCTCTCTGAGCTATGCGATTCAAGCTGTTTATTTGCTATTAAAGTTATGGACAAGGAGTTCTTAGCGAGCAGAAAAAAAATACTCCGTGCACAAACTGAAAGAGAGATACTGCAAATGCTCGACCATCCATTTCTTCCTACGTTATATGCTCATTTTGAGACCGATAAGCACTCATGTTTGGTCATGGACTACTGTCCTGGTGGAGATCTCCACGTGCTGCGACAGAAACAACCATATAAGAGTTTCTCTGAGCATGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCCCTGGAATACTTGCACATGCTAGGAGTCGTTTACCGAGACCTGAAACCTGAAAATGTTCTGGTTCGAGAAGATGGGCACGTAATGCTCACAGATTTTGATTTGTCTCTTAGATGTGTTGTTAATCCAATGGTGCTTCAATCATCATCCCCAGTCGCAGAATCCACCAAGAGGACGTTGAATCCTTGTGATGAATCTAGTTGCATTGATCCTTTTTGCCTCCACCCATCCTGGCATGTCTCGTGCTTCACTCCGAAAGTTTTATCTGCTCCCTACAAATCGCGGAGAACAAAAGCAGATCGTCAGGCTAGTCTATTACCACAGCTCATTGTCGAGCCAACTGGCGCGCGATCCAATTCATTCGTAGGAACCCACGAATACCTCGCTCCTGAGATTGTCAAGGGTGATGGCCATGGGAGTGCTGTTGATTGGTGGACTTATGGGATTTTTCTTTTTGAGCTACTGTATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCAAACATAGTATCCCAAACTCTCAAGTTCCCTGATAGTCCCATAGTAAGTTTTCATGCTAGAGATCTGATCAGATGCCTGCTGACAAAGGAGCCCGAAAACCGATTAGGCTCGTCAAAAGGGGCTATCGAGGTTAAGCAACATCCGTTTTTTGCAGGCCTCAATTGGGCTCTGATACGTTGTGCAGTTCCACCCGAACTTCCCAAGTTTTTCGATGGTGGAACTGATGCAATGCCAATGGATTCTGGGGAGAATATAAAGCATAGAGATCTCGAGAATAGGGATGCGACAATCTTTGACCTGTTTTAG 2580 41.86 MTTLASTSEIVELAEEFESEKAGTSYVLDVGKRFSIEDDINSLFQAIDIRTVRKRSGRQREMGNDALQKSAMKRPIRVGSSYMAGIGISEPASLKQALRGLCISQAAEMAATKRLTRSVGSPRFSEAGTIKRLYRAVVVEANRSVVPENESKANLLEISIVSERISSTFKSTIPELLHKTEAKISNQEAESSSLKDTRVSEDANVDKLMSKDLVVNAVTEMTSMKASDEVGKLKPHFHTPPCEKDLAMNNMANSSTEDLAKQKSVLEEREERGTMRCLSSLSSSGSVVRPNKLAFNNSRFIKPIFRTKNFVKKKAKLEPNSSPRTFDVCIVTVGTDLGSIEEKFENQMPENAQHHESKEEDKGSYVSSSTTLGIEVSSSIVNTESSKRDTSFNCLNRNRPTIMPFYERSRSREKGMFSQSSKSSIGECSTSPSISGESIISGSSRNGIRPHMSKDLKWEAIHHIQEQHKCLSIRNFKLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPYKSFSEHAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHVMLTDFDLSLRCVVNPMVLQSSSPVAESTKRTLNPCDESSCIDPFCLHPSWHVSCFTPKVLSAPYKSRRTKADRQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDSPIVSFHARDLIRCLLTKEPENRLGSSKGAIEVKQHPFFAGLNWALIRCAVPPELPKFFDGGTDAMPMDSGENIKHRDLENRDATIFDLF 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56994948 56999202 - Sed0019744.1 Sed01g3168 702472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3168 859 SMART serkin_6 476 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3168 859 MobiDBLite consensus disorder prediction 349 368 - -
Sed01g3168 859 MobiDBLite consensus disorder prediction 349 363 - -
Sed01g3168 859 Gene3D Phosphorylase Kinase; domain 1 474 555 - -
Sed01g3168 859 CDD STKc_phototropin_like 476 826 - -
Sed01g3168 859 ProSiteProfiles Protein kinase domain profile. 476 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3168 859 FunFam serine/threonine-protein kinase D6PK-like 703 826 - -
Sed01g3168 859 MobiDBLite consensus disorder prediction 416 446 - -
Sed01g3168 859 Pfam Protein kinase domain 477 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3168 859 Pfam Protein kinase domain 705 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3168 859 Coils Coil 177 197 - -
Sed01g3168 859 ProSitePatterns Serine/Threonine protein kinases active-site signature. 597 609 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3168 859 PANTHER FLIPPASE KINASE 1-RELATED 318 829 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed01g3168 859 SUPERFAMILY Protein kinase-like (PK-like) 450 826 IPR011009 -
Sed01g3168 859 FunFam serine/threonine-protein kinase D6PK-like 560 627 - -
Sed01g3168 859 FunFam Serine/threonine-protein kinase D6PK-like 474 559 - -
Sed01g3168 859 Gene3D Transferase(Phosphotransferase) domain 1 556 625 - -
Sed01g3168 859 Gene3D Transferase(Phosphotransferase) domain 1 703 823 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3168 Sed-Chr1:56994948 Sed10g1114 Sed-Chr10:12766537 5.30E-187 dispersed
Sed01g3168 Sed-Chr1:56994948 Sed01g3169 Sed-Chr1:56994948 0.00E+00 tandem
Sed01g3168 Sed-Chr1:56994948 Sed14g0325 Sed-Chr14:3333838 5.10E-198 wgd
Sed01g3168 Sed-Chr1:56994948 Sed05g1210 Sed-Chr5:19794145 3.80E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78697 PF00069 Pkinase 3.60E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3168 - - - 0.0