Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3168 | ATGACTACATTAGCCAGTACTTCAGAAATTGTTGAATTGGCAGAAGAATTTGAATCTGAGAAAGCTGGGACTAGTTACGTGCTAGATGTAGGGAAAAGGTTTTCTATAGAGGATGACATTAATAGTCTTTTTCAGGCAATTGATATCAGAACCGTGCGTAAGAGGTCAGGTCGGCAACGGGAAATGGGTAATGATGCTTTGCAAAAGAGTGCGATGAAGAGACCGATTCGAGTAGGTTCCTCTTACATGGCAGGGATTGGAATTTCTGAACCTGCAAGTTTAAAGCAGGCTTTGAGGGGCTTATGCATATCTCAGGCTGCAGAAATGGCTGCTACAAAGAGGTTAACAAGGTCTGTAGGTTCTCCCAGATTCTCTGAAGCAGGAACTATAAAAAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATAGATCGGTTGTGCCTGAAAATGAAAGCAAAGCCAATTTGCTAGAAATTTCCATTGTTTCAGAAAGAATTTCGTCAACTTTTAAAAGTACGATTCCTGAATTGTTGCATAAAACCGAGGCAAAAATATCAAACCAAGAAGCTGAGTCTTCTTCTCTTAAGGATACGCGAGTATCAGAAGATGCAAATGTAGATAAATTGATGTCAAAGGATCTTGTAGTCAATGCCGTTACCGAAATGACAAGTATGAAGGCATCTGATGAGGTGGGAAAACTTAAACCTCATTTCCATACTCCCCCTTGTGAGAAGGATCTGGCTATGAACAACATGGCTAATTCCTCAACTGAAGATTTGGCAAAACAAAAATCGGTGTTAGAAGAGAGGGAGGAGAGAGGTACTATGCGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTTAGGCCAAATAAATTAGCATTCAATAATTCACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGAACGTTTGATGTGTGCATAGTAACGGTTGGTACTGATTTGGGTTCCATAGAAGAAAAATTTGAGAACCAAATGCCTGAAAATGCACAGCATCATGAGAGTAAAGAGGAAGATAAAGGTTCTTATGTCTCTAGTAGCACAACTTTAGGTATTGAAGTAAGTTCAAGTATAGTAAACACAGAGTCTAGTAAACGTGATACATCTTTCAACTGCTTGAACAGGAACAGACCAACTATTATGCCATTTTATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGTTCTAAAAGTAGTATTGGTGAATGTAGCACTAGCCCAAGCATCAGTGGGGAAAGCATTATCAGTGGATCAAGTCGTAATGGAATTAGGCCTCACATGTCAAAGGATTTGAAATGGGAAGCTATCCACCATATTCAAGAGCAACATAAATGCTTAAGTATAAGAAACTTCAAGTTGTTAAGGAGACTTGGTCTTGGGGACATTGGAACTGTGTATCTCTCTGAGCTATGCGATTCAAGCTGTTTATTTGCTATTAAAGTTATGGACAAGGAGTTCTTAGCGAGCAGAAAAAAAATACTCCGTGCACAAACTGAAAGAGAGATACTGCAAATGCTCGACCATCCATTTCTTCCTACGTTATATGCTCATTTTGAGACCGATAAGCACTCATGTTTGGTCATGGACTACTGTCCTGGTGGAGATCTCCACGTGCTGCGACAGAAACAACCATATAAGAGTTTCTCTGAGCATGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCCCTGGAATACTTGCACATGCTAGGAGTCGTTTACCGAGACCTGAAACCTGAAAATGTTCTGGTTCGAGAAGATGGGCACGTAATGCTCACAGATTTTGATTTGTCTCTTAGATGTGTTGTTAATCCAATGGTGCTTCAATCATCATCCCCAGTCGCAGAATCCACCAAGAGGACGTTGAATCCTTGTGATGAATCTAGTTGCATTGATCCTTTTTGCCTCCACCCATCCTGGCATGTCTCGTGCTTCACTCCGAAAGTTTTATCTGCTCCCTACAAATCGCGGAGAACAAAAGCAGATCGTCAGGCTAGTCTATTACCACAGCTCATTGTCGAGCCAACTGGCGCGCGATCCAATTCATTCGTAGGAACCCACGAATACCTCGCTCCTGAGATTGTCAAGGGTGATGGCCATGGGAGTGCTGTTGATTGGTGGACTTATGGGATTTTTCTTTTTGAGCTACTGTATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCAAACATAGTATCCCAAACTCTCAAGTTCCCTGATAGTCCCATAGTAAGTTTTCATGCTAGAGATCTGATCAGATGCCTGCTGACAAAGGAGCCCGAAAACCGATTAGGCTCGTCAAAAGGGGCTATCGAGGTTAAGCAACATCCGTTTTTTGCAGGCCTCAATTGGGCTCTGATACGTTGTGCAGTTCCACCCGAACTTCCCAAGTTTTTCGATGGTGGAACTGATGCAATGCCAATGGATTCTGGGGAGAATATAAAGCATAGAGATCTCGAGAATAGGGATGCGACAATCTTTGACCTGTTTTAG | 2580 | 41.86 | MTTLASTSEIVELAEEFESEKAGTSYVLDVGKRFSIEDDINSLFQAIDIRTVRKRSGRQREMGNDALQKSAMKRPIRVGSSYMAGIGISEPASLKQALRGLCISQAAEMAATKRLTRSVGSPRFSEAGTIKRLYRAVVVEANRSVVPENESKANLLEISIVSERISSTFKSTIPELLHKTEAKISNQEAESSSLKDTRVSEDANVDKLMSKDLVVNAVTEMTSMKASDEVGKLKPHFHTPPCEKDLAMNNMANSSTEDLAKQKSVLEEREERGTMRCLSSLSSSGSVVRPNKLAFNNSRFIKPIFRTKNFVKKKAKLEPNSSPRTFDVCIVTVGTDLGSIEEKFENQMPENAQHHESKEEDKGSYVSSSTTLGIEVSSSIVNTESSKRDTSFNCLNRNRPTIMPFYERSRSREKGMFSQSSKSSIGECSTSPSISGESIISGSSRNGIRPHMSKDLKWEAIHHIQEQHKCLSIRNFKLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPYKSFSEHAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHVMLTDFDLSLRCVVNPMVLQSSSPVAESTKRTLNPCDESSCIDPFCLHPSWHVSCFTPKVLSAPYKSRRTKADRQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDSPIVSFHARDLIRCLLTKEPENRLGSSKGAIEVKQHPFFAGLNWALIRCAVPPELPKFFDGGTDAMPMDSGENIKHRDLENRDATIFDLF | 859 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56994948 | 56999202 | - | Sed0019744.1 | Sed01g3168 | 702472 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3168 | 859 | SMART | serkin_6 | 476 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3168 | 859 | MobiDBLite | consensus disorder prediction | 349 | 368 | - | - | |
Sed01g3168 | 859 | MobiDBLite | consensus disorder prediction | 349 | 363 | - | - | |
Sed01g3168 | 859 | Gene3D | Phosphorylase Kinase; domain 1 | 474 | 555 | - | - | |
Sed01g3168 | 859 | CDD | STKc_phototropin_like | 476 | 826 | - | - | |
Sed01g3168 | 859 | ProSiteProfiles | Protein kinase domain profile. | 476 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3168 | 859 | FunFam | serine/threonine-protein kinase D6PK-like | 703 | 826 | - | - | |
Sed01g3168 | 859 | MobiDBLite | consensus disorder prediction | 416 | 446 | - | - | |
Sed01g3168 | 859 | Pfam | Protein kinase domain | 477 | 625 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3168 | 859 | Pfam | Protein kinase domain | 705 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3168 | 859 | Coils | Coil | 177 | 197 | - | - | |
Sed01g3168 | 859 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 597 | 609 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3168 | 859 | PANTHER | FLIPPASE KINASE 1-RELATED | 318 | 829 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed01g3168 | 859 | SUPERFAMILY | Protein kinase-like (PK-like) | 450 | 826 | IPR011009 | - | |
Sed01g3168 | 859 | FunFam | serine/threonine-protein kinase D6PK-like | 560 | 627 | - | - | |
Sed01g3168 | 859 | FunFam | Serine/threonine-protein kinase D6PK-like | 474 | 559 | - | - | |
Sed01g3168 | 859 | Gene3D | Transferase(Phosphotransferase) domain 1 | 556 | 625 | - | - | |
Sed01g3168 | 859 | Gene3D | Transferase(Phosphotransferase) domain 1 | 703 | 823 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3168 | Sed-Chr1:56994948 | Sed10g1114 | Sed-Chr10:12766537 | 5.30E-187 | dispersed | |
Sed01g3168 | Sed-Chr1:56994948 | Sed01g3169 | Sed-Chr1:56994948 | 0.00E+00 | tandem | |
Sed01g3168 | Sed-Chr1:56994948 | Sed14g0325 | Sed-Chr14:3333838 | 5.10E-198 | wgd | |
Sed01g3168 | Sed-Chr1:56994948 | Sed05g1210 | Sed-Chr5:19794145 | 3.80E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78697 | PF00069 | Pkinase | 3.60E-36 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3168 | - | - | - | 0.0 |