Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3169 ATGGGTAATGATGCTTTGCAAAAGAGTGCGATGAAGAGACCGATTCGAGTAGGTTCCTCTTACATGGCAGGGATTGGAATTTCTGAACCTGCAAGTTTAAAGCAGGCTTTGAGGGGCTTATGCATATCTCAGGCTGCAGAAATGGCTGCTACAAAGAGGTTAACAAGGTCTGTAGGTTCTCCCAGATTCTCTGAAGCAGGAACTATAAAAAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATAGATCGGTTGTGCCTGAAAATGAAAGCAAAGCCAATTTGCTAGAAATTTCCATTGTTTCAGAAAGAATTTCGTCAACTTTTAAAAGTACGATTCCTGAATTGTTGCATAAAACCGAGGCAAAAATATCAAACCAAGAAGCTGAGTCTTCTTCTCTTAAGGATACGCGAGTATCAGAAGATGCAAATGTAGATAAATTGATGTCAAAGGATCTTGTAGTCAATGCCGTTACCGAAATGACAAGTATGAAGGCATCTGATGAGGTGGGAAAACTTAAACCTCATTTCCATACTCCCCCTTGTGAGAAGGATCTGGCTATGAACAACATGGCTAATTCCTCAACTGAAGATTTGGCAAAACAAAAATCGGTGTTAGAAGAGAGGGAGGAGAGAGGTACTATGCGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTTAGGCCAAATAAATTAGCATTCAATAATTCACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGAACGTTTGATGTGTGCATAGTAACGGTTGGTACTGATTTGGGTTCCATAGAAGAAAAATTTGAGAACCAAATGCCTGAAAATGCACAGCATCATGAGAGTAAAGAGGAAGATAAAGGTTCTTATGTCTCTAGTAGCACAACTTTAGGTATTGAAGTAAGTTCAAGTATAGTAAACACAGAGTCTAGTAAACGTGATACATCTTTCAACTGCTTGAACAGGAACAGACCAACTATTATGCCATTTTATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGTTCTAAAAGTAGTATTGGTGAATGTAGCACTAGCCCAAGCATCAGTGGGGAAAGCATTATCAGTGGATCAAGTCGTAATGGAATTAGGCCTCACATGTCAAAGGATTTGAAATGGGAAGCTATCCACCATATTCAAGAGCAACATAAATGCTTAAGTATAAGAAACTTCAAGTTGTTAAGGAGACTTGGTCTTGGGGACATTGGAACTGTGTATCTCTCTGAGCTATGCGATTCAAGCTGTTTATTTGCTATTAAAGTTATGGACAAGGAGTTCTTAGCGAGCAGAAAAAAAATACTCCGTGCACAAACTGAAAGAGAGATACTGCAAATGCTCGACCATCCATTTCTTCCTACGTTATATGCTCATTTTGAGACCGATAAGCACTCATGTTTGGTCATGGACTACTGTCCTGGTGGAGATCTCCACGTGCTGCGACAGAAACAACCATATAAGAGTTTCTCTGAGCATGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCCCTGGAATACTTGCACATGCTAGGAGTCGTTTACCGAGACCTGAAACCTGAAAATGTTCTGGTTCGAGAAGATGGGCACGTAATGCTCACAGATTTTGATTTGTCTCTTAGATGTGTTGTTAATCCAATGGTGCTTCAATCATCATCCCCAGTCGCAGAATCCACCAAGAGGACGTTGAATCCTTGTGATGAATCTAGTTGCATTGATCCTTTTTGCCTCCACCCATCCTGGCATGTCTCGTGCTTCACTCCGAAAGTTTTATCTGCTCCCTACAAATCGCGGAGAACAAAAGCAGATCGTCAGGCTAGTCTATTACCACAGCTCATTGTCGAGCCAACTGGCGCGCGATCCAATTCATTCGTAGGAACCCACGAATACCTCGCTCCTGAGATTGTCAAGGGTGATGGCCATGGGAGTGCTGTTGATTGGTGGACTTATGGGATTTTTCTTTTTGAGCTACTGTATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCAAACATAGTATCCCAAACTCTCAAGTTCCCTGATAGTCCCATAGTAAGTTTTCATGCTAGAGATCTGATCAGATGCCTGCTGACAAAGGAGCCCGAAAACCGATTAGGCTCGTCAAAAGGGGCTATCGAGGTTAAGCAACATCCGTTTTTTGCAGGCCTCAATTGGGCTCTGATACGTTGTGCAGTTCCACCCGAACTTCCCAAGTTTTTCGATGGTGGAACTGATGCAATGCCAATGGATTCTGGGGAGAATATAAAGCATAGAGATCTCGAGAATAGGGATGCGACAATCTTTGACCTGTTTTAG 2397 41.97 MGNDALQKSAMKRPIRVGSSYMAGIGISEPASLKQALRGLCISQAAEMAATKRLTRSVGSPRFSEAGTIKRLYRAVVVEANRSVVPENESKANLLEISIVSERISSTFKSTIPELLHKTEAKISNQEAESSSLKDTRVSEDANVDKLMSKDLVVNAVTEMTSMKASDEVGKLKPHFHTPPCEKDLAMNNMANSSTEDLAKQKSVLEEREERGTMRCLSSLSSSGSVVRPNKLAFNNSRFIKPIFRTKNFVKKKAKLEPNSSPRTFDVCIVTVGTDLGSIEEKFENQMPENAQHHESKEEDKGSYVSSSTTLGIEVSSSIVNTESSKRDTSFNCLNRNRPTIMPFYERSRSREKGMFSQSSKSSIGECSTSPSISGESIISGSSRNGIRPHMSKDLKWEAIHHIQEQHKCLSIRNFKLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPYKSFSEHAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHVMLTDFDLSLRCVVNPMVLQSSSPVAESTKRTLNPCDESSCIDPFCLHPSWHVSCFTPKVLSAPYKSRRTKADRQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDSPIVSFHARDLIRCLLTKEPENRLGSSKGAIEVKQHPFFAGLNWALIRCAVPPELPKFFDGGTDAMPMDSGENIKHRDLENRDATIFDLF 798
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 56994948 56999202 - Sed0019744.2 Sed01g3169 702473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3169 798 ProSiteProfiles Protein kinase domain profile. 415 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3169 798 SMART serkin_6 415 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3169 798 MobiDBLite consensus disorder prediction 288 307 - -
Sed01g3169 798 MobiDBLite consensus disorder prediction 288 302 - -
Sed01g3169 798 Gene3D Phosphorylase Kinase; domain 1 413 494 - -
Sed01g3169 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g3169 798 MobiDBLite consensus disorder prediction 355 385 - -
Sed01g3169 798 Gene3D Transferase(Phosphotransferase) domain 1 495 564 - -
Sed01g3169 798 FunFam serine/threonine-protein kinase D6PK-like 499 566 - -
Sed01g3169 798 CDD STKc_phototropin_like 415 765 - -
Sed01g3169 798 FunFam Serine/threonine-protein kinase D6PK-like 413 498 - -
Sed01g3169 798 Pfam Protein kinase domain 644 747 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3169 798 Pfam Protein kinase domain 416 564 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g3169 798 FunFam serine/threonine-protein kinase D6PK-like 642 765 - -
Sed01g3169 798 SUPERFAMILY Protein kinase-like (PK-like) 389 765 IPR011009 -
Sed01g3169 798 Gene3D Transferase(Phosphotransferase) domain 1 642 762 - -
Sed01g3169 798 Coils Coil 116 136 - -
Sed01g3169 798 PANTHER FLIPPASE KINASE 1-RELATED 248 768 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3169 Sed-Chr1:56994948 Sed14g0325 Sed-Chr14:3333838 1.50E-191 dispersed
Sed01g3168 Sed-Chr1:56994948 Sed01g3169 Sed-Chr1:56994948 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78698 PF00069 Pkinase 3.20E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3169 - - - 0.0