Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3169 | ATGGGTAATGATGCTTTGCAAAAGAGTGCGATGAAGAGACCGATTCGAGTAGGTTCCTCTTACATGGCAGGGATTGGAATTTCTGAACCTGCAAGTTTAAAGCAGGCTTTGAGGGGCTTATGCATATCTCAGGCTGCAGAAATGGCTGCTACAAAGAGGTTAACAAGGTCTGTAGGTTCTCCCAGATTCTCTGAAGCAGGAACTATAAAAAGATTGTATAGGGCTGTGGTGGTTGAGGCCAATAGATCGGTTGTGCCTGAAAATGAAAGCAAAGCCAATTTGCTAGAAATTTCCATTGTTTCAGAAAGAATTTCGTCAACTTTTAAAAGTACGATTCCTGAATTGTTGCATAAAACCGAGGCAAAAATATCAAACCAAGAAGCTGAGTCTTCTTCTCTTAAGGATACGCGAGTATCAGAAGATGCAAATGTAGATAAATTGATGTCAAAGGATCTTGTAGTCAATGCCGTTACCGAAATGACAAGTATGAAGGCATCTGATGAGGTGGGAAAACTTAAACCTCATTTCCATACTCCCCCTTGTGAGAAGGATCTGGCTATGAACAACATGGCTAATTCCTCAACTGAAGATTTGGCAAAACAAAAATCGGTGTTAGAAGAGAGGGAGGAGAGAGGTACTATGCGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGTTGTTAGGCCAAATAAATTAGCATTCAATAATTCACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGAACGTTTGATGTGTGCATAGTAACGGTTGGTACTGATTTGGGTTCCATAGAAGAAAAATTTGAGAACCAAATGCCTGAAAATGCACAGCATCATGAGAGTAAAGAGGAAGATAAAGGTTCTTATGTCTCTAGTAGCACAACTTTAGGTATTGAAGTAAGTTCAAGTATAGTAAACACAGAGTCTAGTAAACGTGATACATCTTTCAACTGCTTGAACAGGAACAGACCAACTATTATGCCATTTTATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGTTCTAAAAGTAGTATTGGTGAATGTAGCACTAGCCCAAGCATCAGTGGGGAAAGCATTATCAGTGGATCAAGTCGTAATGGAATTAGGCCTCACATGTCAAAGGATTTGAAATGGGAAGCTATCCACCATATTCAAGAGCAACATAAATGCTTAAGTATAAGAAACTTCAAGTTGTTAAGGAGACTTGGTCTTGGGGACATTGGAACTGTGTATCTCTCTGAGCTATGCGATTCAAGCTGTTTATTTGCTATTAAAGTTATGGACAAGGAGTTCTTAGCGAGCAGAAAAAAAATACTCCGTGCACAAACTGAAAGAGAGATACTGCAAATGCTCGACCATCCATTTCTTCCTACGTTATATGCTCATTTTGAGACCGATAAGCACTCATGTTTGGTCATGGACTACTGTCCTGGTGGAGATCTCCACGTGCTGCGACAGAAACAACCATATAAGAGTTTCTCTGAGCATGCAGTCAGGTTCTATGTTGCCGAAGTTCTTCTTGCCCTGGAATACTTGCACATGCTAGGAGTCGTTTACCGAGACCTGAAACCTGAAAATGTTCTGGTTCGAGAAGATGGGCACGTAATGCTCACAGATTTTGATTTGTCTCTTAGATGTGTTGTTAATCCAATGGTGCTTCAATCATCATCCCCAGTCGCAGAATCCACCAAGAGGACGTTGAATCCTTGTGATGAATCTAGTTGCATTGATCCTTTTTGCCTCCACCCATCCTGGCATGTCTCGTGCTTCACTCCGAAAGTTTTATCTGCTCCCTACAAATCGCGGAGAACAAAAGCAGATCGTCAGGCTAGTCTATTACCACAGCTCATTGTCGAGCCAACTGGCGCGCGATCCAATTCATTCGTAGGAACCCACGAATACCTCGCTCCTGAGATTGTCAAGGGTGATGGCCATGGGAGTGCTGTTGATTGGTGGACTTATGGGATTTTTCTTTTTGAGCTACTGTATGGTAAGACTCCCTTCAAAGGTTCAGGAAATGAGGACACATTAGCAAACATAGTATCCCAAACTCTCAAGTTCCCTGATAGTCCCATAGTAAGTTTTCATGCTAGAGATCTGATCAGATGCCTGCTGACAAAGGAGCCCGAAAACCGATTAGGCTCGTCAAAAGGGGCTATCGAGGTTAAGCAACATCCGTTTTTTGCAGGCCTCAATTGGGCTCTGATACGTTGTGCAGTTCCACCCGAACTTCCCAAGTTTTTCGATGGTGGAACTGATGCAATGCCAATGGATTCTGGGGAGAATATAAAGCATAGAGATCTCGAGAATAGGGATGCGACAATCTTTGACCTGTTTTAG | 2397 | 41.97 | MGNDALQKSAMKRPIRVGSSYMAGIGISEPASLKQALRGLCISQAAEMAATKRLTRSVGSPRFSEAGTIKRLYRAVVVEANRSVVPENESKANLLEISIVSERISSTFKSTIPELLHKTEAKISNQEAESSSLKDTRVSEDANVDKLMSKDLVVNAVTEMTSMKASDEVGKLKPHFHTPPCEKDLAMNNMANSSTEDLAKQKSVLEEREERGTMRCLSSLSSSGSVVRPNKLAFNNSRFIKPIFRTKNFVKKKAKLEPNSSPRTFDVCIVTVGTDLGSIEEKFENQMPENAQHHESKEEDKGSYVSSSTTLGIEVSSSIVNTESSKRDTSFNCLNRNRPTIMPFYERSRSREKGMFSQSSKSSIGECSTSPSISGESIISGSSRNGIRPHMSKDLKWEAIHHIQEQHKCLSIRNFKLLRRLGLGDIGTVYLSELCDSSCLFAIKVMDKEFLASRKKILRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPYKSFSEHAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHVMLTDFDLSLRCVVNPMVLQSSSPVAESTKRTLNPCDESSCIDPFCLHPSWHVSCFTPKVLSAPYKSRRTKADRQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDSPIVSFHARDLIRCLLTKEPENRLGSSKGAIEVKQHPFFAGLNWALIRCAVPPELPKFFDGGTDAMPMDSGENIKHRDLENRDATIFDLF | 798 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 56994948 | 56999202 | - | Sed0019744.2 | Sed01g3169 | 702473 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3169 | 798 | ProSiteProfiles | Protein kinase domain profile. | 415 | 747 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3169 | 798 | SMART | serkin_6 | 415 | 747 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3169 | 798 | MobiDBLite | consensus disorder prediction | 288 | 307 | - | - | |
Sed01g3169 | 798 | MobiDBLite | consensus disorder prediction | 288 | 302 | - | - | |
Sed01g3169 | 798 | Gene3D | Phosphorylase Kinase; domain 1 | 413 | 494 | - | - | |
Sed01g3169 | 798 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 536 | 548 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g3169 | 798 | MobiDBLite | consensus disorder prediction | 355 | 385 | - | - | |
Sed01g3169 | 798 | Gene3D | Transferase(Phosphotransferase) domain 1 | 495 | 564 | - | - | |
Sed01g3169 | 798 | FunFam | serine/threonine-protein kinase D6PK-like | 499 | 566 | - | - | |
Sed01g3169 | 798 | CDD | STKc_phototropin_like | 415 | 765 | - | - | |
Sed01g3169 | 798 | FunFam | Serine/threonine-protein kinase D6PK-like | 413 | 498 | - | - | |
Sed01g3169 | 798 | Pfam | Protein kinase domain | 644 | 747 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3169 | 798 | Pfam | Protein kinase domain | 416 | 564 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g3169 | 798 | FunFam | serine/threonine-protein kinase D6PK-like | 642 | 765 | - | - | |
Sed01g3169 | 798 | SUPERFAMILY | Protein kinase-like (PK-like) | 389 | 765 | IPR011009 | - | |
Sed01g3169 | 798 | Gene3D | Transferase(Phosphotransferase) domain 1 | 642 | 762 | - | - | |
Sed01g3169 | 798 | Coils | Coil | 116 | 136 | - | - | |
Sed01g3169 | 798 | PANTHER | FLIPPASE KINASE 1-RELATED | 248 | 768 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3169 | Sed-Chr1:56994948 | Sed14g0325 | Sed-Chr14:3333838 | 1.50E-191 | dispersed | |
Sed01g3168 | Sed-Chr1:56994948 | Sed01g3169 | Sed-Chr1:56994948 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78698 | PF00069 | Pkinase | 3.20E-36 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3169 | - | - | - | 0.0 |