Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3180 ATGGCGAGCCATAGAGTTGAAGTAACTGGTCCTTCAAACCATCAATTTCTTTATGGAATCAACAACAATCCTTCCTCTAATTTGATCAATCATGATGGTCCATCTTTTGATTTTGGAGAATTGGAGCAAGCATTTGTGTTACAAGGACAGGGAGCTAAGAACAAACCACATCCTCAACAAACCAAACAAAGCTTTTTCTCAGGCAGGCCTGGAGCAACTCTGGAAATGTTCCCTTCTTGGCCAATCCAATTCCAACAAACTCCAAGAGGAATGGGTTTGGGAGGAAGAGATGAGAGCACTGATGAATCTGTTTCAGCTGTGAACACTCATACAATAAACAAATTTGTTCATCACCATAATAATCAATTGGAATTGGAACAAGAATCTTCAATGAGTAAAAAGGCTTGTTCTTCTTCTTCCTCTGGTCATCATGGCTTTATTCAGAAGCATCAGCTGCAGATTCAACCTGATATTCTGCTCAGTGATGTTTCAATTACTGCTCTATCACCAAAACATCAATCCCCTCAACAAAAGAGAAAAGGATGTGATTCGATTTCAACATCGCAGACACAACAAGTTGACACTAAGACATTGAGACGTTTGGCTCAGAACAGAGAGGCTGCAAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTCCAGCAACTTGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAACAAGACCTTCAACGGACTCGATCTCAGGGTTTGTTTCTGGGATCTAGTGGTGCTGGCGGCGGCATTGTCAGCTCCGGAGCAGCAAGGTTTGATATGGAATATGCAAGGTGGTTGGAAGAGGACCACCAGCACACGGCGGAGCTGCGTGGGGGACTGGAGGCGCATCTACCGGACCGGGATTTGAGATCGATGGTCGACGCCTGCATTTGCCATTATGACGAAATCTTTCGACTCAAAGGAGAGGCTGCCAAATCTGATGTCTTCCATCTCATCACCGGAATTTGGATGTCCCCGGCCGAGCGTTGCTTCCTCTGGATGGGCGGATTCCGGCCATCTGATTTGATTAAGATGTCAATGTCACAATTGGACCCAATAACAGAACAGCAAGTCATGGAAATTTACAAACTACAGCATTCGTCGCAGCAGGCTGAGGATGCTTTATCTCAAGGCCTGGATCAGCTCCACCATTCCTTGACGGAAATTCTAGCCGGCGCTCCGCTCATCGCCGGCATCAACCACATGGTTTTGGCCATGGATAAGCTCTCCAATCTCCAAGGCTTTGTTCATCAGGCTGACATTTTGAGACAACAAATACTTCACCAACTGTATAGGATACTCACTATCCGACAAGCAGCTAAATGTTTTCTGGTCATCGGTGAATATTATAGTAGATTACGAGCCCTAAGTTCTCTATGGTCCTCTCCTCCAAAAGAAAACTCAGTTCGACAAACAAAGACCAGTTTTGGACGGTTGAGATCGAGACGATTCTACGAGTGGTGA 1479 45.3 MASHRVEVTGPSNHQFLYGINNNPSSNLINHDGPSFDFGELEQAFVLQGQGAKNKPHPQQTKQSFFSGRPGATLEMFPSWPIQFQQTPRGMGLGGRDESTDESVSAVNTHTINKFVHHHNNQLELEQESSMSKKACSSSSSGHHGFIQKHQLQIQPDILLSDVSITALSPKHQSPQQKRKGCDSISTSQTQQVDTKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRTRSQGLFLGSSGAGGGIVSSGAARFDMEYARWLEEDHQHTAELRGGLEAHLPDRDLRSMVDACICHYDEIFRLKGEAAKSDVFHLITGIWMSPAERCFLWMGGFRPSDLIKMSMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHHSLTEILAGAPLIAGINHMVLAMDKLSNLQGFVHQADILRQQILHQLYRILTIRQAAKCFLVIGEYYSRLRALSSLWSSPPKENSVRQTKTSFGRLRSRRFYEW 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57940769 57949644 + Sed0022129.1 Sed01g3180 702484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3180 492 MobiDBLite consensus disorder prediction 169 196 - -
Sed01g3180 492 SUPERFAMILY Leucine zipper domain 196 239 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3180 492 PANTHER TRANSCRIPTION FACTOR TGA9 119 471 - -
Sed01g3180 492 SMART brlzneu 192 269 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3180 492 Pfam Seed dormancy control 278 350 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed01g3180 492 ProSiteProfiles DOG1 domain profile. 260 468 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Sed01g3180 492 FunFam BZIP family transcription factor 195 244 - -
Sed01g3180 492 CDD bZIP_HBP1b-like 196 248 - -
Sed01g3180 492 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 199 214 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3180 492 Gene3D - 195 245 - -
Sed01g3180 492 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3180 492 Pfam bZIP transcription factor 195 237 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3180 492 Coils Coil 215 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3180 Sed-Chr1:57940769 Sed11g1222 Sed-Chr11:28039170 8.40E-129 dispersed
Sed01g3180 Sed-Chr1:57940769 Sed02g0339 Sed-Chr2:39918160 5.30E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37350 PF14144 DOG1 7.10E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3180 K14431 - csv:101223216 553.132