Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3190 ATGGCGGAAGAGCACAGATGCCAAGCGCCGAAGCTTTGCGTGAACAACTGTGGATTCTTCGGGAGTCCGGCGATGCGGGATCTGTGCTCGAAGTGCTACCGAGATCTGCAGGTTAAGGAACAACAATCCTCCTCCGCCAAGCTCGCCCTAAACCAAACCCTAACATCCGCCACCGCCGCCGCACCCTCACCCTCCTTCCCGTTGAATCTCCAATCGGCTCTACCGGAAGCGAGCCAGCCCTCGGCGGCGGCGGCGGCACCGGCACAGCAGCACCCGAGCCGATGCAGGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCAGGTGCGGGATGGTGTTCTGCGGGACCCACCGGTACCCGGAGCAGCACGGTTGCGAATTCGACTTCAAGGGAATGGGGAAGGAGCAGATCGCGAGGGCCAATCCGGTGGTGAAAGGGGAGAAGCTGAGCAGGATCTGA 465 62.58 MAEEHRCQAPKLCVNNCGFFGSPAMRDLCSKCYRDLQVKEQQSSSAKLALNQTLTSATAAAPSPSFPLNLQSALPEASQPSAAAAAPAQQHPSRCRTCRRRVGLTGFKCRCGMVFCGTHRYPEQHGCEFDFKGMGKEQIARANPVVKGEKLSRI 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58217077 58218575 - Sed0001950.1 Sed01g3190 702494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3190 154 PANTHER AN1-TYPE ZINC FINGER PROTEIN 8 154 IPR050652 -
Sed01g3190 154 SMART A20_3 10 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed01g3190 154 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Sed01g3190 154 Pfam AN1-like Zinc finger 96 131 IPR000058 GO:0008270(InterPro)
Sed01g3190 154 ProSiteProfiles Zinc finger AN1-type profile. 89 135 IPR000058 GO:0008270(InterPro)
Sed01g3190 154 SUPERFAMILY AN1-like Zinc finger 82 149 IPR035896 -
Sed01g3190 154 Gene3D - 71 150 IPR035896 -
Sed01g3190 154 FunFam Zinc finger AN1-type containing 6 71 150 - -
Sed01g3190 154 SMART AN1_Zf_4 95 132 IPR000058 GO:0008270(InterPro)
Sed01g3190 154 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed01g3190 154 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Sed01g3190 154 Gene3D - 1 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3190 Sed-Chr1:58217077 Sed14g0313 Sed-Chr14:3264076 1.20E-41 dispersed
Sed01g3190 Sed-Chr1:58217077 Sed05g0857 Sed-Chr5:6842819 4.20E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3190 - - - 0.0