Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3190 | ATGGCGGAAGAGCACAGATGCCAAGCGCCGAAGCTTTGCGTGAACAACTGTGGATTCTTCGGGAGTCCGGCGATGCGGGATCTGTGCTCGAAGTGCTACCGAGATCTGCAGGTTAAGGAACAACAATCCTCCTCCGCCAAGCTCGCCCTAAACCAAACCCTAACATCCGCCACCGCCGCCGCACCCTCACCCTCCTTCCCGTTGAATCTCCAATCGGCTCTACCGGAAGCGAGCCAGCCCTCGGCGGCGGCGGCGGCACCGGCACAGCAGCACCCGAGCCGATGCAGGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCAGGTGCGGGATGGTGTTCTGCGGGACCCACCGGTACCCGGAGCAGCACGGTTGCGAATTCGACTTCAAGGGAATGGGGAAGGAGCAGATCGCGAGGGCCAATCCGGTGGTGAAAGGGGAGAAGCTGAGCAGGATCTGA | 465 | 62.58 | MAEEHRCQAPKLCVNNCGFFGSPAMRDLCSKCYRDLQVKEQQSSSAKLALNQTLTSATAAAPSPSFPLNLQSALPEASQPSAAAAAPAQQHPSRCRTCRRRVGLTGFKCRCGMVFCGTHRYPEQHGCEFDFKGMGKEQIARANPVVKGEKLSRI | 154 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 58217077 | 58218575 | - | Sed0001950.1 | Sed01g3190 | 702494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3190 | 154 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 8 | 154 | IPR050652 | - | |
Sed01g3190 | 154 | SMART | A20_3 | 10 | 34 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Sed01g3190 | 154 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 12 | 54 | - | - | |
Sed01g3190 | 154 | Pfam | AN1-like Zinc finger | 96 | 131 | IPR000058 | GO:0008270(InterPro) | |
Sed01g3190 | 154 | ProSiteProfiles | Zinc finger AN1-type profile. | 89 | 135 | IPR000058 | GO:0008270(InterPro) | |
Sed01g3190 | 154 | SUPERFAMILY | AN1-like Zinc finger | 82 | 149 | IPR035896 | - | |
Sed01g3190 | 154 | Gene3D | - | 71 | 150 | IPR035896 | - | |
Sed01g3190 | 154 | FunFam | Zinc finger AN1-type containing 6 | 71 | 150 | - | - | |
Sed01g3190 | 154 | SMART | AN1_Zf_4 | 95 | 132 | IPR000058 | GO:0008270(InterPro) | |
Sed01g3190 | 154 | ProSiteProfiles | Zinc finger A20-type profile. | 7 | 41 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Sed01g3190 | 154 | Pfam | A20-like zinc finger | 12 | 34 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Sed01g3190 | 154 | Gene3D | - | 1 | 60 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3190 | Sed-Chr1:58217077 | Sed14g0313 | Sed-Chr14:3264076 | 1.20E-41 | dispersed | |
Sed01g3190 | Sed-Chr1:58217077 | Sed05g0857 | Sed-Chr5:6842819 | 4.20E-34 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3190 | - | - | - | 0.0 |