Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3208 ATGTCGGGTTCTCGAGCCCCCAACCCCTCGGCCGACCAGATCATGCACTCCATGAAGCCCCCATTCGCATCCCCCGGGGACTACCACCGCTTCGCCCTCGATCCTCGTCTCTCCGATCACCAACCCGACTCCCTCCTCGTCAAATCTCCGCAATTGAAGCGGAAGAGTGTGGCGGCAGATTATGAAGCCGAGTCAACCGACCGAGCAGCTGGTCCTCGATTTACTCAGGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGTTAACCAAATGCAGTAGATCAGGGCCACAAACTCCCATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAACAATGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATCACAAATGTCCTTGAAGGAATTGGTCTAATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGCCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTATTTGTTACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCACATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAAGATAGTTCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGTCCCCGAGCATGCCGTCAAGTTCAGGGTTGAATGAAACACCTGCAACAACAATAGCAACAGATGAGACTAGGGAAAAAGAAATTGGAACGCTGGAGCAAGATGTACATATAATGTGCTCCGACCTAAATGCTTCACAGGATTTCGTGGGTGGAATTATGAAAATTGTTCCGTCGGTTGTTGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCGGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGAGTTGAATGGAATGAACTAGGTACATTTCATGAAGATTACAGCATTGCCAGTGTCGGCACACCGCAAACCCAGAACTCACTTTCGAATAATGCACCTGATGTGCACACTGCTAATCCTTCTAGCAGCTGTAACGAGGATCTGTCGAGATAA 1374 46.07 MSGSRAPNPSADQIMHSMKPPFASPGDYHRFALDPRLSDHQPDSLLVKSPQLKRKSVAADYEAESTDRAAGPRFTQVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYKIVLRSTMGPIDVYLVSQFEEKFEEINGVEVSPSMPSSSGLNETPATTIATDETREKEIGTLEQDVHIMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIASVGTPQTQNSLSNNAPDVHTANPSSSCNEDLSR 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58598748 58610232 - Sed0009146.1 Sed01g3208 702512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3208 457 Pfam E2F/DP family winged-helix DNA-binding domain 130 193 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g3208 457 CDD E2F_DD 204 310 IPR032198 GO:0046983(InterPro)
Sed01g3208 457 Coils Coil 206 243 - -
Sed01g3208 457 Pfam E2F transcription factor CC-MB domain 209 309 IPR032198 GO:0046983(InterPro)
Sed01g3208 457 Gene3D - 122 195 IPR036388 -
Sed01g3208 457 MobiDBLite consensus disorder prediction 428 457 - -
Sed01g3208 457 MobiDBLite consensus disorder prediction 97 123 - -
Sed01g3208 457 SUPERFAMILY E2F-DP heterodimerization region 205 310 IPR037241 -
Sed01g3208 457 MobiDBLite consensus disorder prediction 72 90 - -
Sed01g3208 457 Gene3D - 200 310 - -
Sed01g3208 457 PANTHER TRANSCRIPTION FACTOR E2F 26 405 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed01g3208 457 MobiDBLite consensus disorder prediction 1 123 - -
Sed01g3208 457 SUPERFAMILY Winged helix DNA-binding domain 128 191 IPR036390 -
Sed01g3208 457 FunFam E2F transcription factor 1 122 195 - -
Sed01g3208 457 SMART E2F_TDP_2 128 193 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g3208 457 Coils Coil 144 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3208 Sed-Chr1:58598748 Sed14g0280 Sed-Chr14:2893542 2.50E-127 dispersed
Sed03g1691 Sed-Chr3:10982597 Sed01g3208 Sed-Chr1:58598748 6.30E-56 transposed
Sed01g3208 Sed-Chr1:58598748 Sed14g0279 Sed-Chr14:2893542 2.50E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37359 PF16421 E2F_CC-MB 2.80E-35 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3208 K06620 - csv:101219318 788.489