Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3208 ATGTCGGGTTCTCGAGCCCCCAACCCCTCGGCCGACCAGATCATGCACTCCATGAAGCCCCCATTCGCATCCCCCGGGGACTACCACCGCTTCGCCCTCGATCCTCGTCTCTCCGATCACCAACCCGACTCCCTCCTCGTCAAATCTCCGCAATTGAAGCGGAAGAGTGTGGCGGCAGATTATGAAGCCGAGTCAACCGACCGAGCAGCTGGTCCTCGATTTACTCAGGTAGTTAACAGTTCCCATCAAACACCTGTATCTGTGAAAGGAGGAAAGGGAAACAAATCAAGGTTAACCAAATGCAGTAGATCAGGGCCACAAACTCCCATGTCAAATGTTGGTTCACCTTCTGCAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATCAAACAAGCGGAAGATGGTATTCTTGATCTAAACAATGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATCACAAATGTCCTTGAAGGAATTGGTCTAATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGCCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTTCCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTATTTGTTACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCACATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAAGATAGTTCTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTCAGTCAGTTTGAAGAGAAGTTTGAGGAGATAAATGGTGTGGAAGTGTCCCCGAGCATGCCGTCAAGTTCAGGGTTGAATGAAACACCTGCAACAACAATAGCAACAGATGAGACTAGGGAAAAAGAAATTGGAACGCTGGAGCAAGATGTACATATAATGTGCTCCGACCTAAATGCTTCACAGGATTTCGTGGGTGGAATTATGAAAATTGTTCCGTCGGTTGTTGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCGGATGTTAGCATCACTGACATGTGGAGAACTGAACCTGGAGTTGAATGGAATGAACTAGGTACATTTCATGAAGATTACAGCATTGCCAGTGTCGGCACACCGCAAACCCAGAACTCACTTTCGAATAATGCACCTGATGTGCACACTGCTAATCCTTCTAGCAGCTGTAACGAGGATCTGTCGAGATAA 1374 46.07 MSGSRAPNPSADQIMHSMKPPFASPGDYHRFALDPRLSDHQPDSLLVKSPQLKRKSVAADYEAESTDRAAGPRFTQVVNSSHQTPVSVKGGKGNKSRLTKCSRSGPQTPMSNVGSPSANNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGDVDDNYAGLQAEVENLSMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYKIVLRSTMGPIDVYLVSQFEEKFEEINGVEVSPSMPSSSGLNETPATTIATDETREKEIGTLEQDVHIMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIASVGTPQTQNSLSNNAPDVHTANPSSSCNEDLSR 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58598748 58610232 - Sed0009146.1 Sed01g3208 702512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3208 457 Pfam E2F/DP family winged-helix DNA-binding domain 130 193 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g3208 457 CDD E2F_DD 204 310 IPR032198 GO:0046983(InterPro)
Sed01g3208 457 Coils Coil 206 243 - -
Sed01g3208 457 Pfam E2F transcription factor CC-MB domain 209 309 IPR032198 GO:0046983(InterPro)
Sed01g3208 457 Gene3D - 122 195 IPR036388 -
Sed01g3208 457 MobiDBLite consensus disorder prediction 428 457 - -
Sed01g3208 457 MobiDBLite consensus disorder prediction 97 123 - -
Sed01g3208 457 SUPERFAMILY E2F-DP heterodimerization region 205 310 IPR037241 -
Sed01g3208 457 MobiDBLite consensus disorder prediction 72 90 - -
Sed01g3208 457 Gene3D - 200 310 - -
Sed01g3208 457 PANTHER TRANSCRIPTION FACTOR E2F 26 405 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Sed01g3208 457 MobiDBLite consensus disorder prediction 1 123 - -
Sed01g3208 457 SUPERFAMILY Winged helix DNA-binding domain 128 191 IPR036390 -
Sed01g3208 457 FunFam E2F transcription factor 1 122 195 - -
Sed01g3208 457 SMART E2F_TDP_2 128 193 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Sed01g3208 457 Coils Coil 144 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3208 K06620 - - csv:101219318 788.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3208 Sed-Chr1:58598748 Sed14g0280 Sed-Chr14:2893542 2.50E-127 dispersed
Sed03g1691 Sed-Chr3:10982597 Sed01g3208 Sed-Chr1:58598748 6.30E-56 transposed
Sed01g3208 Sed-Chr1:58598748 Sed14g0279 Sed-Chr14:2893542 2.50E-127 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed07g1209 . 79 282 E2F-DP Transcription Factor Family AT5G02470 54.6 3.2e-59 226.5
Sed13g0318 . 79 284 E2F-DP Transcription Factor Family AT5G02470 54.1 1.0e-57 221.5
Sed01g3208 . 9 422 E2F-DP Transcription Factor Family AT5G22220 56.5 3.7e-110 396.4
Sed03g1691 . 164 353 E2F-DP Transcription Factor Family AT5G22220 57.4 9.3e-53 205.7
Sed01g3208 . 17 429 E2F-DP Transcription Factor Family AT2G36010 54.8 6.8e-115 412.1
Sed14g0279 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0280 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed14g0281 . 22 432 E2F-DP Transcription Factor Family AT2G36010 55.9 1.7e-113 407.5
Sed03g1691 . 160 417 E2F-DP Transcription Factor Family AT1G47870 54.3 7.4e-67 252.3
Sed08g2542 . 3 374 E2F-DP Transcription Factor Family AT3G48160 54.4 4.2e-102 369.4
Sed01g1687 . 3 366 E2F-DP Transcription Factor Family AT3G48160 55.5 1.4e-100 364.4
Sed08g2541 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
Sed08g2543 . 3 351 E2F-DP Transcription Factor Family AT3G48160 54.5 1.2e-91 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37359 PF16421 E2F_CC-MB 2.80E-35 No_clan Sed TF