Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3216 | ATGGCGACGTACTTTAACGGCGGTTCAGAAATCCAAACGAACTCTGACGGAATTCACACTCTTTACCTTATGAACCCCAGTTATGTGCCGTACTCTGACAACACCCACTCCCAAACGCCCACCAGTATGCTCTTTCTGAACCCCTCCGGCCACGCGCTCAGCACTCCCACTCTCCCCCACGCGCCGCCTTCCAGCCACCACTTCGTCGGAATTCCCCAACCCCACCCCGACATCTCACCCCTCCGCCCCCACTACAACCTATGGCCTCCCCCTATGGACCAACCCCCCCACGGAATCCCCGCCGACTCCCCCGATTTAGCCTTCCGCCGCTCCCCCATGCAGCAGGGTTTGTCCTTGACCCTCTCCTCCCAACAGTCGCTGTACCGGACGATGTCGGCCGATCAGGACATTCAAGCCAGCGGCGGCGCCCCGGCTATCTCGCCCAGAAATGGAGATGAGATTAGGGTGTCGGGGAACTCGCCCGTGTCGGTGTCGATGTCGGTGGCCTCGAGCGGGATAACGGGGGTTCAGAGTGTGATATTGGGGTCCAAGTACTTGAAAGCTGCACAGGAACTTTTGGATGAAGTGGTTCATGTTGGGAAAGGAATTGACAAAGCCGACAAAGGAAATGGGACAAAGGACAAGATGAAGATGAAGAAAGAGTCCTCCACGGCTGCCGGCGGCGAAACGGCTTCCAAATCCGCCGCTGAGCTCAACACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCTAAGCTTATTTCCATGCTTGATGAGGTGGAGCAAAAGTACAGACAGTACCACCAGCAAATGCAAGGAGTGGTTAGTTCATTCGAGCAGGCGGCGGGGTTAGGGTCTGCCAAGTCATACGCCTCGCTGGCATTGCAAACAATCTCAAAGCAATTCCGTTGCCTAAAAGATGCCATTTGTGCACAAATCAAAGCCACGGGGAAAAGCTTGGGGGAAGAGGAGTGGCTAGGTGGCAAGATCGAAGGGTCCAGATTGAGATACGTGGACCATCATCTACGGCAGCAAAGGGCCTTGCAACAATTGGGAATGATTCAGCACAACACTTGGAGACCTCAACGGGGTTTGCCTGAACGGGCTGTTTCTGTTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCATCCATATCCTAAAGATTCAGACAAGATTATTCTGGCCAAACAAACGGGACTCACTAGGAGCCAAGTTTCTAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATCAAAGACCAAGAACAAAATGGAGATTCCCACGACATGAACAAAAACAACAAAAACGAATCCAACAACCAACATGAAGGAGATCAAAACAATGCGACATCAGATCCTTTTAAACTAAACCACCAAATGAACGCACCACAATCCAAGACAGAAAATTTTATCAACAATCAAAACAACAATTCCTTCACCGACCACATTTCCAATTCATCCATCTCATCATCCTCAATCTTAGGATCCCTACAAACTCACTCCGGCTTCAACCTCGTTCGACCATCCCCCGAAAACATGCTATCAAGCCCCAAAAAACAAAGGACCACAAACAACCTCGAAACCCCATCCACAAAAAACATGAACATGAACATGAACGATCACGGCGGTGGATTTGGTTCGTATCCAATGGCCGAAATTGGATCGAGGTTCAATTCGGAGCTGTTGACAACGAGGTTTCATGGAAATGGTGTGTCTCTCACTCTTGGCCTTCCCCATTCGGATAATCTCTCTCTTTCAGGAACACAACAAAATTACCTCTCCAACCGAAACCTTCAATTGGGGAGAATGGTTGATATCACCAATGGAGGACCTGATTTCTCCGACATCAATCCCGCCCCGCCTCCTCATTCGGTGTCGACTGGCTACGACGGTGTCGAAATGCAAACCACAAAAAGGTTCGCTGCTCAATTATTGCCTGATTTTGTCGCTTGA | 1986 | 49.8 | MATYFNGGSEIQTNSDGIHTLYLMNPSYVPYSDNTHSQTPTSMLFLNPSGHALSTPTLPHAPPSSHHFVGIPQPHPDISPLRPHYNLWPPPMDQPPHGIPADSPDLAFRRSPMQQGLSLTLSSQQSLYRTMSADQDIQASGGAPAISPRNGDEIRVSGNSPVSVSMSVASSGITGVQSVILGSKYLKAAQELLDEVVHVGKGIDKADKGNGTKDKMKMKKESSTAAGGETASKSAAELNTAQRQDLQMKKAKLISMLDEVEQKYRQYHQQMQGVVSSFEQAAGLGSAKSYASLALQTISKQFRCLKDAICAQIKATGKSLGEEEWLGGKIEGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGDSHDMNKNNKNESNNQHEGDQNNATSDPFKLNHQMNAPQSKTENFINNQNNNSFTDHISNSSISSSSILGSLQTHSGFNLVRPSPENMLSSPKKQRTTNNLETPSTKNMNMNMNDHGGGFGSYPMAEIGSRFNSELLTTRFHGNGVSLTLGLPHSDNLSLSGTQQNYLSNRNLQLGRMVDITNGGPDFSDINPAPPPHSVSTGYDGVEMQTTKRFAAQLLPDFVA | 661 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 59287834 | 59292754 | + | Sed0008730.1 | Sed01g3216 | 702520 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3216 | 661 | MobiDBLite | consensus disorder prediction | 204 | 235 | - | - | |
Sed01g3216 | 661 | MobiDBLite | consensus disorder prediction | 432 | 450 | - | - | |
Sed01g3216 | 661 | SMART | prehox3 | 174 | 311 | IPR006563 | - | |
Sed01g3216 | 661 | MobiDBLite | consensus disorder prediction | 432 | 470 | - | - | |
Sed01g3216 | 661 | MobiDBLite | consensus disorder prediction | 204 | 222 | - | - | |
Sed01g3216 | 661 | FunFam | BEL1-like homeodomain protein 9 | 362 | 424 | - | - | |
Sed01g3216 | 661 | SUPERFAMILY | Homeodomain-like | 360 | 425 | IPR009057 | - | |
Sed01g3216 | 661 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 130 | 457 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed01g3216 | 661 | CDD | homeodomain | 359 | 420 | IPR001356 | GO:0003677(InterPro) | |
Sed01g3216 | 661 | MobiDBLite | consensus disorder prediction | 54 | 76 | - | - | |
Sed01g3216 | 661 | Pfam | Homeobox KN domain | 376 | 415 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed01g3216 | 661 | Pfam | Associated with HOX | 179 | 309 | IPR006563 | - | |
Sed01g3216 | 661 | MobiDBLite | consensus disorder prediction | 451 | 470 | - | - | |
Sed01g3216 | 661 | MobiDBLite | consensus disorder prediction | 520 | 548 | - | - | |
Sed01g3216 | 661 | Gene3D | - | 354 | 433 | - | - | |
Sed01g3216 | 661 | SMART | HOX_1 | 359 | 423 | IPR001356 | GO:0003677(InterPro) | |
Sed01g3216 | 661 | Coils | Coil | 243 | 270 | - | - | |
Sed01g3216 | 661 | ProSiteProfiles | 'Homeobox' domain profile. | 356 | 419 | IPR001356 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3216 | Sed-Chr1:59287834 | Sed12g1342 | Sed-Chr12:10289584 | 1.10E-136 | dispersed | |
Sed01g3216 | Sed-Chr1:59287834 | Sed01g3217 | Sed-Chr1:59287834 | 0.00E+00 | tandem | |
Sed01g3216 | Sed-Chr1:59287834 | Sed02g0458 | Sed-Chr2:41804815 | 5.10E-129 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37360 | PF07526 | POX | 2.90E-48 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3216 | - | - | - | 0.0 |