Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3216 ATGGCGACGTACTTTAACGGCGGTTCAGAAATCCAAACGAACTCTGACGGAATTCACACTCTTTACCTTATGAACCCCAGTTATGTGCCGTACTCTGACAACACCCACTCCCAAACGCCCACCAGTATGCTCTTTCTGAACCCCTCCGGCCACGCGCTCAGCACTCCCACTCTCCCCCACGCGCCGCCTTCCAGCCACCACTTCGTCGGAATTCCCCAACCCCACCCCGACATCTCACCCCTCCGCCCCCACTACAACCTATGGCCTCCCCCTATGGACCAACCCCCCCACGGAATCCCCGCCGACTCCCCCGATTTAGCCTTCCGCCGCTCCCCCATGCAGCAGGGTTTGTCCTTGACCCTCTCCTCCCAACAGTCGCTGTACCGGACGATGTCGGCCGATCAGGACATTCAAGCCAGCGGCGGCGCCCCGGCTATCTCGCCCAGAAATGGAGATGAGATTAGGGTGTCGGGGAACTCGCCCGTGTCGGTGTCGATGTCGGTGGCCTCGAGCGGGATAACGGGGGTTCAGAGTGTGATATTGGGGTCCAAGTACTTGAAAGCTGCACAGGAACTTTTGGATGAAGTGGTTCATGTTGGGAAAGGAATTGACAAAGCCGACAAAGGAAATGGGACAAAGGACAAGATGAAGATGAAGAAAGAGTCCTCCACGGCTGCCGGCGGCGAAACGGCTTCCAAATCCGCCGCTGAGCTCAACACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCTAAGCTTATTTCCATGCTTGATGAGGTGGAGCAAAAGTACAGACAGTACCACCAGCAAATGCAAGGAGTGGTTAGTTCATTCGAGCAGGCGGCGGGGTTAGGGTCTGCCAAGTCATACGCCTCGCTGGCATTGCAAACAATCTCAAAGCAATTCCGTTGCCTAAAAGATGCCATTTGTGCACAAATCAAAGCCACGGGGAAAAGCTTGGGGGAAGAGGAGTGGCTAGGTGGCAAGATCGAAGGGTCCAGATTGAGATACGTGGACCATCATCTACGGCAGCAAAGGGCCTTGCAACAATTGGGAATGATTCAGCACAACACTTGGAGACCTCAACGGGGTTTGCCTGAACGGGCTGTTTCTGTTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCATCCATATCCTAAAGATTCAGACAAGATTATTCTGGCCAAACAAACGGGACTCACTAGGAGCCAAGTTTCTAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATCAAAGACCAAGAACAAAATGGAGATTCCCACGACATGAACAAAAACAACAAAAACGAATCCAACAACCAACATGAAGGAGATCAAAACAATGCGACATCAGATCCTTTTAAACTAAACCACCAAATGAACGCACCACAATCCAAGACAGAAAATTTTATCAACAATCAAAACAACAATTCCTTCACCGACCACATTTCCAATTCATCCATCTCATCATCCTCAATCTTAGGATCCCTACAAACTCACTCCGGCTTCAACCTCGTTCGACCATCCCCCGAAAACATGCTATCAAGCCCCAAAAAACAAAGGACCACAAACAACCTCGAAACCCCATCCACAAAAAACATGAACATGAACATGAACGATCACGGCGGTGGATTTGGTTCGTATCCAATGGCCGAAATTGGATCGAGGTTCAATTCGGAGCTGTTGACAACGAGGTTTCATGGAAATGGTGTGTCTCTCACTCTTGGCCTTCCCCATTCGGATAATCTCTCTCTTTCAGGAACACAACAAAATTACCTCTCCAACCGAAACCTTCAATTGGGGAGAATGGTTGATATCACCAATGGAGGACCTGATTTCTCCGACATCAATCCCGCCCCGCCTCCTCATTCGGTGTCGACTGGCTACGACGGTGTCGAAATGCAAACCACAAAAAGGTTCGCTGCTCAATTATTGCCTGATTTTGTCGCTTGA 1986 49.8 MATYFNGGSEIQTNSDGIHTLYLMNPSYVPYSDNTHSQTPTSMLFLNPSGHALSTPTLPHAPPSSHHFVGIPQPHPDISPLRPHYNLWPPPMDQPPHGIPADSPDLAFRRSPMQQGLSLTLSSQQSLYRTMSADQDIQASGGAPAISPRNGDEIRVSGNSPVSVSMSVASSGITGVQSVILGSKYLKAAQELLDEVVHVGKGIDKADKGNGTKDKMKMKKESSTAAGGETASKSAAELNTAQRQDLQMKKAKLISMLDEVEQKYRQYHQQMQGVVSSFEQAAGLGSAKSYASLALQTISKQFRCLKDAICAQIKATGKSLGEEEWLGGKIEGSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKDQEQNGDSHDMNKNNKNESNNQHEGDQNNATSDPFKLNHQMNAPQSKTENFINNQNNNSFTDHISNSSISSSSILGSLQTHSGFNLVRPSPENMLSSPKKQRTTNNLETPSTKNMNMNMNDHGGGFGSYPMAEIGSRFNSELLTTRFHGNGVSLTLGLPHSDNLSLSGTQQNYLSNRNLQLGRMVDITNGGPDFSDINPAPPPHSVSTGYDGVEMQTTKRFAAQLLPDFVA 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59287834 59292754 + Sed0008730.1 Sed01g3216 702520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3216 661 MobiDBLite consensus disorder prediction 204 235 - -
Sed01g3216 661 MobiDBLite consensus disorder prediction 432 450 - -
Sed01g3216 661 SMART prehox3 174 311 IPR006563 -
Sed01g3216 661 MobiDBLite consensus disorder prediction 432 470 - -
Sed01g3216 661 MobiDBLite consensus disorder prediction 204 222 - -
Sed01g3216 661 FunFam BEL1-like homeodomain protein 9 362 424 - -
Sed01g3216 661 SUPERFAMILY Homeodomain-like 360 425 IPR009057 -
Sed01g3216 661 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 130 457 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g3216 661 CDD homeodomain 359 420 IPR001356 GO:0003677(InterPro)
Sed01g3216 661 MobiDBLite consensus disorder prediction 54 76 - -
Sed01g3216 661 Pfam Homeobox KN domain 376 415 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed01g3216 661 Pfam Associated with HOX 179 309 IPR006563 -
Sed01g3216 661 MobiDBLite consensus disorder prediction 451 470 - -
Sed01g3216 661 MobiDBLite consensus disorder prediction 520 548 - -
Sed01g3216 661 Gene3D - 354 433 - -
Sed01g3216 661 SMART HOX_1 359 423 IPR001356 GO:0003677(InterPro)
Sed01g3216 661 Coils Coil 243 270 - -
Sed01g3216 661 ProSiteProfiles 'Homeobox' domain profile. 356 419 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3216 Sed-Chr1:59287834 Sed12g1342 Sed-Chr12:10289584 1.10E-136 dispersed
Sed01g3216 Sed-Chr1:59287834 Sed01g3217 Sed-Chr1:59287834 0.00E+00 tandem
Sed01g3216 Sed-Chr1:59287834 Sed02g0458 Sed-Chr2:41804815 5.10E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37360 PF07526 POX 2.90E-48 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3216 - - - 0.0