Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3224 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAAATTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGCAGCTTCTCTTCAAGTTCAGCTTCCTCCTCAAGATCTTTCCCAACAGGGTCATAAACAGCAGCAAGTGAGCTCGGGGGATTCGAGCAAGGACAGAGGTTCTTCTTCTTCGTCTTCAAAATGCAGTAAACTTGATTCTGCTGAACGTCACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAACGTGTTCCTTCGGCATATAATAGGTTCATCAAGGAGGAAATTCAAAGGATTAAGGCCAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAATAAATTAA 516 43.8 MSLDMMASERVCYVHCKFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMAASLQVQLPPQDLSQQGHKQQQVSSGDSSKDRGSSSSSSKCSKLDSAERHQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQIN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59497608 59504770 - Sed0009422.1 Sed01g3224 702528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3224 171 CDD HMG-box_SF 116 152 - -
Sed01g3224 171 MobiDBLite consensus disorder prediction 62 118 - -
Sed01g3224 171 SUPERFAMILY HMG-box 107 155 IPR036910 -
Sed01g3224 171 MobiDBLite consensus disorder prediction 94 111 - -
Sed01g3224 171 FunFam Axial regulator YABBY 107 171 - -
Sed01g3224 171 MobiDBLite consensus disorder prediction 62 93 - -
Sed01g3224 171 Pfam YABBY protein 7 162 IPR006780 GO:0007275(InterPro)
Sed01g3224 171 Gene3D High mobility group box domain 97 157 IPR036910 -
Sed01g3224 171 PANTHER PROTEIN YABBY 6-RELATED 6 169 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3224 K25796 - - csv:101222154 278.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3224 Sed-Chr1:59497608 Sed11g0124 Sed-Chr11:1057656 1.80E-46 dispersed
Sed01g3224 Sed-Chr1:59497608 Sed11g0122 Sed-Chr11:1057656 1.80E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2037 . 1 182 C2C2-YABBY Transcription Factor Family AT1G69180 51.4 2.4e-44 176.4
Sed01g4021 . 62 220 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed01g4022 . 1 159 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed05g0986 . 69 234 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 2.9e-41 166.0
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 68.8 2.1e-56 216.5
Sed01g4021 . 18 210 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.1e-44 174.5
Sed12g2369 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 2.0e-43 173.3
Sed08g0677 . 6 179 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 2.9e-42 169.5
Sed05g0986 . 25 224 C2C2-YABBY Transcription Factor Family AT1G08465 50.5 5.0e-42 168.7
Sed08g0678 . 6 164 C2C2-YABBY Transcription Factor Family AT1G08465 54.9 1.1e-41 167.5
Sed11g0122 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed11g0124 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed10g1447 . 8 177 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 3.2e-41 166.0
Sed01g4021 . 29 219 C2C2-YABBY Transcription Factor Family AT4G00180 56.9 6.7e-51 198.4
Sed05g0986 . 36 233 C2C2-YABBY Transcription Factor Family AT4G00180 53.7 5.3e-48 188.7
Sed01g4022 . 1 158 C2C2-YABBY Transcription Factor Family AT4G00180 54.7 1.4e-37 154.1
Sed04g0622 . 1 171 C2C2-YABBY Transcription Factor Family AT1G23420 51.4 1.3e-40 164.5
Sed08g0677 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.4 3.9e-62 235.3
Sed08g0678 . 8 160 C2C2-YABBY Transcription Factor Family AT2G26580 74.8 8.7e-62 234.2
Sed12g2369 . 7 169 C2C2-YABBY Transcription Factor Family AT2G26580 73.0 1.1e-61 233.8
Sed11g0122 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed11g0124 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed10g1447 . 10 168 C2C2-YABBY Transcription Factor Family AT2G26580 73.8 1.3e-60 230.3
Sed11g0123 . 4 147 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 4.0e-51 198.7
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 3.2e-48 189.1
Sed01g4021 . 20 182 C2C2-YABBY Transcription Factor Family AT2G26580 55.0 1.1e-43 174.1
Sed05g0986 . 25 197 C2C2-YABBY Transcription Factor Family AT2G26580 54.3 1.4e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37362 PF04690 YABBY 1.80E-73 CL0114 Sed TF