Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3224 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAAATTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTGTCTGTAAACATGGCAGCTTCTCTTCAAGTTCAGCTTCCTCCTCAAGATCTTTCCCAACAGGGTCATAAACAGCAGCAAGTGAGCTCGGGGGATTCGAGCAAGGACAGAGGTTCTTCTTCTTCGTCTTCAAAATGCAGTAAACTTGATTCTGCTGAACGTCACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAACGTGTTCCTTCGGCATATAATAGGTTCATCAAGGAGGAAATTCAAAGGATTAAGGCCAACAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAATAAATTAA 516 43.8 MSLDMMASERVCYVHCKFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMAASLQVQLPPQDLSQQGHKQQQVSSGDSSKDRGSSSSSSKCSKLDSAERHQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQIN 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59497608 59504770 - Sed0009422.1 Sed01g3224 702528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3224 171 CDD HMG-box_SF 116 152 - -
Sed01g3224 171 MobiDBLite consensus disorder prediction 62 118 - -
Sed01g3224 171 SUPERFAMILY HMG-box 107 155 IPR036910 -
Sed01g3224 171 MobiDBLite consensus disorder prediction 94 111 - -
Sed01g3224 171 FunFam Axial regulator YABBY 107 171 - -
Sed01g3224 171 MobiDBLite consensus disorder prediction 62 93 - -
Sed01g3224 171 Pfam YABBY protein 7 162 IPR006780 GO:0007275(InterPro)
Sed01g3224 171 Gene3D High mobility group box domain 97 157 IPR036910 -
Sed01g3224 171 PANTHER PROTEIN YABBY 6-RELATED 6 169 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3224 Sed-Chr1:59497608 Sed11g0124 Sed-Chr11:1057656 1.80E-46 dispersed
Sed01g3224 Sed-Chr1:59497608 Sed11g0122 Sed-Chr11:1057656 1.80E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37362 PF04690 YABBY 1.80E-73 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3224 K25796 - csv:101222154 278.87