Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g3225 | ATGGCGGATATTAGAAAGTGGTTCATGAAAGCGCACGATAAAGACAATGGTAGTGCAAAAAAGCCTGCTCCAAGCAATTCAGAGAAATCTGCTACCACGGAGCTAGAGTCCGGAAAAACAGGGCTGAGTGGTGGGGAAAGTACTGGCAGAAGGATAACTAGTAAGTATTTTGCCTCAGAAAAGCAGAAGTCTAAGGATACCAAAGAAACCGAGGAACTCCCAATCAAACGAAAGTCTCGACACGATGCTAAGCAATCACCAGCTAAAAGAAAGTCCCAAAAGGATAGCGAGGAATCACCGAGAGCTACACCTTTAAAAAAACTAAACAAAATTGATGACAATGACGATGATGTTGATTTTTCAAGTTCTAGAAAAAACTTGTCCGATGTCACTCCCAACAAAAAGTTGAAAAGTGGTTCAGGAAGAGGAATTACACCAAAACCTGTTGAGATTGACGAGATTGATGATGAGGAAGCTAAGGGCACAGAGTCTTCTTTGAAGCCTAGTGGAAGGGGTAGGGGAGGAAGAGGTTCTTCTACTGCAACTGCTGGTGGTAGAGGCAGAGGCGGTGGACGAAGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAATCCCTGAAGGTGCTCCTGACTGCTTAGCTGGGTTAACTTTTGTAATAAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGTCGAGTAACTGGATCTATCAGCAAAAAAACAAATTACCTACTATGCGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCGAAAGAGCTAGGAACTATTTTTCTCACCGAGGATGGATTATTTGACAAGATCCGTGCGTCAGGCAAAAGAACTCCTACTAAATCTGTGGTTAAGTCCGTGGAATCTCCAACAGAGAAAAATTCTATGAAAGAGAAAAATTCCATGAAAATACAAGCAAAGAGTGCAGTACGCAAAGATTTGTCTGCTGGTGCTTCACCTGCCAAGCAAAAAGGCCGAACAGTTGAATTTTCTTTTCTAACATGGACGGAAAAATATAAGCCAAAGGTTCCGAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGACTGGTTAGCACATTGGAACGAGAACTTCCTTGATGGTGGAAGCAAAAAGAAGGGTAAAAAGCTCAATGATTCTGGTGCGAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACGTCGGCTAAGTTGGTCAGTCAGCTGCTTGGTTACGAGGCTATTGAGGTAAATGCCAGTGACAATAGAGGTAAAGCAGATGCAAAAATTCAAAAGGGAATCAGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGTAATGAATCTTTGCATTTCAGAATGGATCAGCCAAAGCTTCCCAAAACTGTGTTGATTATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATTTGATTGCGAGCATTAAAATCTCCAAAATTCCAATCATCTGCATCTGTAATGACCGCTACAGCCAGAAGTTGAAAAGCCTTGTGAACTATTGTCTGCTTCTCAGCTTTAGAAAACCTACTAAACAACAGATGGCAAAAAGATTGATTCAAGTCGCAAGTGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAAAGTAAATGGAGATATGCGTATGGCACTAAATCAGTTGCAGTATCTGAGTCTGTCATTATCAGTTATTAAATATGATGATATCCGGCAACGGCTTCTGAGCAGCATGAAAGATGAAGACATCTCACCTTTCACTGCTGTTGATAAGCTGTTCGGTTGTAATTCTGGGAAGTTACGGATGGATGAACGGATAGACCTCAGCATGAGTGATATGGATCTGGTCCCTCTTATCATTCAGGAAAATTATATTAATTATAGGCCAAGCTCTGTTAGTAAAGATGACAATGGGATCAAACGAATGGATTTGATTGCCCGTGCAGCTGAATCTATTGCCGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAATGGCAACTCTCTCAAAGTAGTTCTATTGCTTCTTGTGTAATTCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGGTTTAGTGCATGGTTGGGAAAAAATTCAACCTTTGGAAAAAATGTGAGGCTTTTGGAGGATTTGCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCTGGGAGGGAACACCTACGAGTTGAGAATCTTACTCTATTTCTAAAGAGGTTGACTGAACCACTGCACACGCTTCCTAAGGATGAAGCTGTTAAAATGGTTGTAGAATTTATGAGCCTATATTCGATCAGTCAGGAGGATTTTGACACTGTTGTGGAGTTATCAAAATTTCAGGGTCGTAAGAATCCTTTAGATGGCGTACCCCCTGCAGTCAAAGCTGCTCTAACAAAGGCATACAAAGAAGTGAGCAAGACACACATGGTGCGGGCTGCAGATCTCATTACACTTCCTGGAATGAAAAAGGCCCCGAAGAAGCGAATCACAGCAATACTAGAACCAGCTGAGGATACAATAGAGGGTGCTGGAGGAGACGCATTGGCCGAGAGTGACGATGACAACACTTTGGACAATGACGGTGCTGAAGACTCAACAGATGGCGAGAAGCTGAAACTGGAACTTCAAAGCTTGAATAAGAAAGGAATCCAAGTGCAATTGGATTTGAAGGGTGGGGAAAGTTCGAGCGCCAAGAAATCCGGTGGTAGAGGAAGAGGAAGAGGTAGTTCCCAGGCTTCAGAGAAGAAAGGTGGGCGAGGTTCAGGGTCTGCCACAAAGAGGAAAAGAGGAAGTTAA | 2925 | 42.6 | MADIRKWFMKAHDKDNGSAKKPAPSNSEKSATTELESGKTGLSGGESTGRRITSKYFASEKQKSKDTKETEELPIKRKSRHDAKQSPAKRKSQKDSEESPRATPLKKLNKIDDNDDDVDFSSSRKNLSDVTPNKKLKSGSGRGITPKPVEIDEIDDEEAKGTESSLKPSGRGRGGRGSSTATAGGRGRGGGRSGFMNFGERKDPPHKGEKEIPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSISKKTNYLLCDEDIGGRKSSKAKELGTIFLTEDGLFDKIRASGKRTPTKSVVKSVESPTEKNSMKEKNSMKIQAKSAVRKDLSAGASPAKQKGRTVEFSFLTWTEKYKPKVPNDIIGNQSLVKQLHDWLAHWNENFLDGGSKKKGKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQLLGYEAIEVNASDNRGKADAKIQKGISGSNANSIKELISNESLHFRMDQPKLPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLIQVASAEGLQVNEIALEELAEKVNGDMRMALNQLQYLSLSLSVIKYDDIRQRLLSSMKDEDISPFTAVDKLFGCNSGKLRMDERIDLSMSDMDLVPLIIQENYINYRPSSVSKDDNGIKRMDLIARAAESIADGDIINVQIRRHRQWQLSQSSSIASCVIPASLLHGQRETLEQGERNFNRFSAWLGKNSTFGKNVRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVVELSKFQGRKNPLDGVPPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRITAILEPAEDTIEGAGGDALAESDDDNTLDNDGAEDSTDGEKLKLELQSLNKKGIQVQLDLKGGESSSAKKSGGRGRGRGSSQASEKKGGRGSGSATKRKRGS | 974 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 59566033 | 59587515 | + | Sed0002287.1 | Sed01g3225 | 702529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 302 | 324 | - | - | |
| Sed01g3225 | 974 | FunFam | Replication factor C subunit 1 | 354 | 542 | - | - | |
| Sed01g3225 | 974 | SMART | AAA_5 | 406 | 544 | IPR003593 | GO:0016887(InterPro) | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 148 | 164 | - | - | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 199 | 214 | - | - | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 927 | 974 | - | - | |
| Sed01g3225 | 974 | FunFam | Replication factor C subunit 1 | 615 | 724 | - | - | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 885 | 911 | - | - | |
| Sed01g3225 | 974 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 614 | 759 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
| Sed01g3225 | 974 | FunFam | Replication factor C subunit 1 | 191 | 294 | - | - | |
| Sed01g3225 | 974 | Pfam | ATPase family associated with various cellular activities (AAA) | 410 | 522 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed01g3225 | 974 | Pfam | BRCA1 C Terminus (BRCT) domain | 217 | 290 | IPR001357 | - | |
| Sed01g3225 | 974 | Gene3D | - | 615 | 725 | - | - | |
| Sed01g3225 | 974 | SUPERFAMILY | BRCT domain | 215 | 294 | IPR036420 | - | |
| Sed01g3225 | 974 | Gene3D | - | 543 | 613 | - | - | |
| Sed01g3225 | 974 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 355 | 603 | IPR027417 | - | |
| Sed01g3225 | 974 | SMART | BRCT_7 | 217 | 295 | IPR001357 | - | |
| Sed01g3225 | 974 | CDD | HLD_clamp_RFC | 543 | 601 | IPR047854 | - | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 890 | 905 | - | - | |
| Sed01g3225 | 974 | CDD | BRCT_RFC1 | 215 | 293 | - | - | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 20 | 55 | - | - | |
| Sed01g3225 | 974 | Gene3D | BRCT domain | 192 | 294 | IPR036420 | - | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 56 | 123 | - | - | |
| Sed01g3225 | 974 | CDD | AAA | 403 | 506 | - | - | |
| Sed01g3225 | 974 | FunFam | Replication factor C subunit 1 | 543 | 614 | - | - | |
| Sed01g3225 | 974 | Gene3D | - | 354 | 542 | IPR027417 | - | |
| Sed01g3225 | 974 | PIRSF | RFC1 | 1 | 186 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Sed01g3225 | 974 | PIRSF | RFC1 | 176 | 946 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Sed01g3225 | 974 | ProSiteProfiles | BRCT domain profile. | 215 | 293 | IPR001357 | - | |
| Sed01g3225 | 974 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 65 | 940 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| Sed01g3225 | 974 | MobiDBLite | consensus disorder prediction | 1 | 215 | - | - | |
| Sed01g3225 | 974 | Pfam | Replication factor RFC1 C terminal domain | 683 | 845 | IPR013725 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g3225 | Sed-Chr1:59566033 | Sed02g1479 | Sed-Chr2:50757186 | 5.40E-18 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g3225 | K10754 | - | csv:101204361 | 1533.85 |