Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3232 ATGGCGTCTCGAGCTGTTGTTCCTCACCAACAACTGAAAATTAGAGGCGAAGGTAAGCCGAAGATGGTAGCGGCGGAAGGAAGAACAAGGCGAGTTCTTCAAGATATAGGGAATCTAGTGCCAGATCGAGCCGTGGAGGGGAAAGCCGGACCTCAACCTGCCGAGAAGAACAAGAGAGCAATCAACCAAAAGCTGGATGGGGGAGTTGGAAAGGCTGCAGTACCTGATAAGGGCAAAGCTGAGAAACCTAAGACTGTACATATAATCAACATCAGCGACAGTAAATCGAGGGATAAGAATAAGCGGACGCTGACTTCAACCCTTAGTGCTAGAAGCAAGGCTGTCTGTGGACTCACCAATAATCCATTCGATTCGGTAGCTAATATCGATGAAGCTGATGCCAACAACGAACTGGCAGTAGTTGAATATTTGGATGATATGTACAAGTTTTACAAACTTGCAGAAGATGAAAGCAGAGTGACAGATTACATGGGATCACAGCCAGATTTGAATGCTAAGATGAGATCTATTCTCATAGATTGGTTGATTGAAGTTCATCGCAAGTTTGAATTGATGCCAGAAACCCTTTACCTCACTGTCAACATTGTAGACAGATTCCTTTCCTTGAAAACTGTTCCAAGGAGGGAGCTTCAATTAGTAGGAATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTTAATGATTTTGTGAGTATATCTGCAAATACGTACCCGAGAGAACAGATTTTGGTGATGGAGAAAACAATCTTGGGCAGGCTGGAATGGCTTCTAACAGTTCCAACACCTTATGTATTTCTTGTTCGATATGTTAAAGCTTCTGAGCCGTCTGATAAGGAGATGGAGAACATGGTCTTTTTTCTGGCAGAGCTTGGTCTGATGAACTATCCCATAGCAATATCCTACAGCCCTTCAATGATTGCTTCAGCAGCTGTCTATGCTGCACGGTGCACACTGGAAAAGAGCCCTATCTGGACTCCAACTTTGCAGCACCATACAGGCTATGAGGAAGATGAGTTAAAGGAATGTGCAGAAGTTCTTGTGAGCTTGCACAGTGGAGCTGTAAATGGCAAGCTCAAGGCAGTGTATAGAAAATACACGAGTCCAGATCGTTGTGCTGTTGCTCTTTATCTTCCAGCTAAACTCCTAGTTAAGATGTCATCATAA 1203 43.97 MASRAVVPHQQLKIRGEGKPKMVAAEGRTRRVLQDIGNLVPDRAVEGKAGPQPAEKNKRAINQKLDGGVGKAAVPDKGKAEKPKTVHIINISDSKSRDKNKRTLTSTLSARSKAVCGLTNNPFDSVANIDEADANNELAVVEYLDDMYKFYKLAEDESRVTDYMGSQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRRELQLVGISSMLIACKYEEIWAPEVNDFVSISANTYPREQILVMEKTILGRLEWLLTVPTPYVFLVRYVKASEPSDKEMENMVFFLAELGLMNYPIAISYSPSMIASAAVYAARCTLEKSPIWTPTLQHHTGYEEDELKECAEVLVSLHSGAVNGKLKAVYRKYTSPDRCAVALYLPAKLLVKMSS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59716035 59718914 + Sed0000111.1 Sed01g3232 702536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3232 400 FunFam G2/mitotic-specific cyclin 159 266 - -
Sed01g3232 400 Gene3D - 160 271 - -
Sed01g3232 400 FunFam G2/mitotic-specific cyclin-1 267 387 - -
Sed01g3232 400 ProSitePatterns Cyclins signature. 175 206 IPR048258 -
Sed01g3232 400 PANTHER CYCLINS 127 379 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed01g3232 400 Gene3D - 146 387 - -
Sed01g3232 400 Pfam Cyclin, C-terminal domain 273 389 IPR004367 -
Sed01g3232 400 SMART cyclin_7 180 264 IPR013763 -
Sed01g3232 400 SMART cyclin_7 277 361 IPR013763 -
Sed01g3232 400 CDD CYCLIN_AtCycB-like_rpt2 273 391 - -
Sed01g3232 400 SMART Cyclin_C_2 273 392 IPR004367 -
Sed01g3232 400 Pfam Cyclin, N-terminal domain 146 270 IPR006671 -
Sed01g3232 400 PIRSF Cyclin_A_B_D_E 2 87 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed01g3232 400 PIRSF Cyclin_A_B_D_E 48 400 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed01g3232 400 CDD CYCLIN_AtCycB-like_rpt1 124 268 - -
Sed01g3232 400 SUPERFAMILY Cyclin-like 135 268 IPR036915 -
Sed01g3232 400 SUPERFAMILY Cyclin-like 274 394 IPR036915 -
Sed01g3232 400 MobiDBLite consensus disorder prediction 75 103 - -
Sed01g3232 400 MobiDBLite consensus disorder prediction 43 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3232 Sed-Chr1:59716035 Sed03g2139 Sed-Chr3:15543519 1.50E-112 dispersed
Sed01g3232 Sed-Chr1:59716035 Sed03g2149 Sed-Chr3:15582286 8.10E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3232 K21777 - csv:101222873 640.573