Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3234 ATGAAATATTCCATCAATACCTTTATAAGACTAGTAATTTTTCTAGCAACTCTTGGAGGGATCTCCGGCGAATCGCCGCCGGCTCCGGCAGACAAGGCGCAACTAAACAAATGGTTCGAAGAGAACGTAAAGCCGCTTGCCGATTGCTCGGCCAAGCTGGATCCAGAGCTGGTGGCGGCGGAAAAAAGCGCCACCGTGGTGAAAGTAATGGCGGACGGAAGCGGCGATTTCAAGACGGTGACGGAAGCCATTGCCAGCGTTCCGGCGGACAACACAAAGCGAGTTGTGATTTGGATCGGAAAAGGAGTTTATAAAGAGAAGCTCAAGATCGATAAAAATAAACCATTTGTTACTCTTTATGGCTCACCTGATGCAATTCCCACTTTGAGCTTTAATGGTAACGCTAAAAAATACGGCACCGTTTATAGTGCAACTTTGATCGTCGAATCTGATTATTTTGTTGCTGCCAATCTCATCATTGAGAATACATCCCCAAGACCAGATGCGGCAAAGTCAGGAGAACAGGCATTAGCCGCTAGACTAATGGGAACAAAAGCAGCAGTTTATAATTGCAAATTTATTGGCTTTCAAGATACCCTTTGCGACGACGATGGTTTGCATCTCTACAAGGATTGCTTCATTCAAGGAACTGTGGACTTCATTTTTGGAAAAGGAACAACTCTTTATTTGAACACTCAAATTGATGTGGCGGGAGACGGAGGATTAGCAGTGATTACAGCTCATTCAAGAGAAGAAGAATCAGACAAAAGCGGCTATTCATTTGTGCATTGCAACATTACTGGCACCGGCGGCCAAAACACTTATCTAGGAAGAGCTTGGAAGTCTAAGTCTAGAACTGTCTTTGCCTACACCAATATGGCCGACATTATTCATCCTGAAGGCTGGAACGACATGAACCACGACGGCTTCGATGCCACGGTTTCGTTCGGAGAATACAAGAATTCAGGGCCGGGATCCGTCGTAGTCAAGCGTGTGAAATTTGGAAAGCAATTGACTGATGTTGAAGTGAAGCCATACTTGAGCCTTGATCACATTCAGAGTGAAAAGTGGTTGCTTCCCCCTCCTAATCAGCCCCTTGCTTCTTCCGGCAAACCCCTTGCTCCTTCCGATGAACCCTCTTCTCCTTCAGGTCAACCACTTTCTCCTGCTGATGAACCCTCTTCTCCTGCTGATGAACCCTCTTCTCCTGCTGATAAACCCTCTTCTCCTTCCAATCCTAAAGCCAAAGAACTTTAA 1257 45.9 MKYSINTFIRLVIFLATLGGISGESPPAPADKAQLNKWFEENVKPLADCSAKLDPELVAAEKSATVVKVMADGSGDFKTVTEAIASVPADNTKRVVIWIGKGVYKEKLKIDKNKPFVTLYGSPDAIPTLSFNGNAKKYGTVYSATLIVESDYFVAANLIIENTSPRPDAAKSGEQALAARLMGTKAAVYNCKFIGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTTLYLNTQIDVAGDGGLAVITAHSREEESDKSGYSFVHCNITGTGGQNTYLGRAWKSKSRTVFAYTNMADIIHPEGWNDMNHDGFDATVSFGEYKNSGPGSVVVKRVKFGKQLTDVEVKPYLSLDHIQSEKWLLPPPNQPLASSGKPLAPSDEPSSPSGQPLSPADEPSSPADEPSSPADKPSSPSNPKAKEL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59766179 59768315 + Sed0025138.1 Sed01g3234 702538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3234 418 MobiDBLite consensus disorder prediction 358 418 - -
Sed01g3234 418 SUPERFAMILY Pectin lyase-like 63 359 IPR011050 -
Sed01g3234 418 ProSitePatterns Pectinesterase signature 2. 214 223 IPR033131 -
Sed01g3234 418 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 63 359 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Sed01g3234 418 Pfam Pectinesterase 67 344 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed01g3234 418 Gene3D - 60 361 IPR012334 -
Sed01g3234 418 MobiDBLite consensus disorder prediction 374 390 - -
Sed01g3234 418 FunFam Pectinesterase 62 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3234 Sed-Chr1:59766179 Sed04g1277 Sed-Chr4:26828504 1.80E-132 dispersed
Sed04g3582 Sed-Chr4:45150487 Sed01g3234 Sed-Chr1:59766179 1.20E-156 transposed
Sed01g3234 Sed-Chr1:59766179 Sed05g1198 Sed-Chr5:18662566 4.00E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3234 K01051 - csv:101205095 562.762