Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3239 ATGGAACAGAGAAAGTACAGAGCCGATGTGTCGTTACTTGTCGTTCTCATTTTCTTCTCCCTCTCCGGCCGATCTGTCGTTCGTGCCTACAAGAACTACACCGTCGGCGATTCCCTCGGCTGGTTCGACAATTTGGAAAAACCGGCCGTCGATTACCAAAATTGGACCGTGGGAAAAACCTTCTCCCTCGGCGATTTTCTAATATTTAACACGGACAACAATCACTCGGTTGTGCAAACATTCAACTTCACAACATACAAGCTCTGTGACTACGACGATGCATCGGAAAAGGACACGACGGAATGGTCCGCTGCCGACCCATCAGCGACGACTACGTATGCTGTGACGGTGCCTGTGCAACTAGAGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTATGATGGAGAACAGTGTCAAAATGGGCAACAATTCATGATAAACGTGACTCATGGACAGGGCCTTCCAAAAAGCTCGGGAGACTCTTCCAATGGAGCTTCGGCTCCGGAAGCTCCCGACTCCGGGGACGAAACGGAGGCCGCACCCGACACCATTGTCCCTTCCAGCTTCGACAATCCCAAAAACGACGTCGCTGATAATGCAGATAGCGACAAGAAGGAAGCTAATTCAGGCTCCGTTTCGCTTCGCTTCAAGTTTAATAATGAGTTTTTCTTCTTGTTAGTTGGTTCTGCATGCATGTTTCTTTTTACTGAGTAA 717 48.68 MEQRKYRADVSLLVVLIFFSLSGRSVVRAYKNYTVGDSLGWFDNLEKPAVDYQNWTVGKTFSLGDFLIFNTDNNHSVVQTFNFTTYKLCDYDDASEKDTTEWSAADPSATTTYAVTVPVQLEKEGTNYFFSGNYDGEQCQNGQQFMINVTHGQGLPKSSGDSSNGASAPEAPDSGDETEAAPDTIVPSSFDNPKNDVADNADSDKKEANSGSVSLRFKFNNEFFFLLVGSACMFLFTE 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59985855 59989270 + Sed0025886.1 Sed01g3239 702543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3239 238 MobiDBLite consensus disorder prediction 150 169 - -
Sed01g3239 238 ProSiteProfiles Phytocyanin domain profile. 31 151 IPR003245 GO:0009055(InterPro)
Sed01g3239 238 Pfam Plastocyanin-like domain 41 143 IPR003245 GO:0009055(InterPro)
Sed01g3239 238 CDD Phytocyanin 31 149 - -
Sed01g3239 238 MobiDBLite consensus disorder prediction 150 208 - -
Sed01g3239 238 PANTHER BLUE COPPER PROTEIN 14 165 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Sed01g3239 238 FunFam Early nodulin-like protein 18 30 152 - -
Sed01g3239 238 Gene3D - 30 154 IPR008972 -
Sed01g3239 238 SUPERFAMILY Cupredoxins 31 150 IPR008972 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3239 Sed-Chr1:59985855 Sed09g0106 Sed-Chr9:805897 3.70E-29 dispersed
Sed01g3239 Sed-Chr1:59985855 Sed09g1489 Sed-Chr9:38626289 1.60E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3239 - - - 0.0