Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3239 | ATGGAACAGAGAAAGTACAGAGCCGATGTGTCGTTACTTGTCGTTCTCATTTTCTTCTCCCTCTCCGGCCGATCTGTCGTTCGTGCCTACAAGAACTACACCGTCGGCGATTCCCTCGGCTGGTTCGACAATTTGGAAAAACCGGCCGTCGATTACCAAAATTGGACCGTGGGAAAAACCTTCTCCCTCGGCGATTTTCTAATATTTAACACGGACAACAATCACTCGGTTGTGCAAACATTCAACTTCACAACATACAAGCTCTGTGACTACGACGATGCATCGGAAAAGGACACGACGGAATGGTCCGCTGCCGACCCATCAGCGACGACTACGTATGCTGTGACGGTGCCTGTGCAACTAGAGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTATGATGGAGAACAGTGTCAAAATGGGCAACAATTCATGATAAACGTGACTCATGGACAGGGCCTTCCAAAAAGCTCGGGAGACTCTTCCAATGGAGCTTCGGCTCCGGAAGCTCCCGACTCCGGGGACGAAACGGAGGCCGCACCCGACACCATTGTCCCTTCCAGCTTCGACAATCCCAAAAACGACGTCGCTGATAATGCAGATAGCGACAAGAAGGAAGCTAATTCAGGCTCCGTTTCGCTTCGCTTCAAGTTTAATAATGAGTTTTTCTTCTTGTTAGTTGGTTCTGCATGCATGTTTCTTTTTACTGAGTAA | 717 | 48.68 | MEQRKYRADVSLLVVLIFFSLSGRSVVRAYKNYTVGDSLGWFDNLEKPAVDYQNWTVGKTFSLGDFLIFNTDNNHSVVQTFNFTTYKLCDYDDASEKDTTEWSAADPSATTTYAVTVPVQLEKEGTNYFFSGNYDGEQCQNGQQFMINVTHGQGLPKSSGDSSNGASAPEAPDSGDETEAAPDTIVPSSFDNPKNDVADNADSDKKEANSGSVSLRFKFNNEFFFLLVGSACMFLFTE | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 59985855 | 59989270 | + | Sed0025886.1 | Sed01g3239 | 702543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3239 | 238 | MobiDBLite | consensus disorder prediction | 150 | 169 | - | - | |
Sed01g3239 | 238 | ProSiteProfiles | Phytocyanin domain profile. | 31 | 151 | IPR003245 | GO:0009055(InterPro) | |
Sed01g3239 | 238 | Pfam | Plastocyanin-like domain | 41 | 143 | IPR003245 | GO:0009055(InterPro) | |
Sed01g3239 | 238 | CDD | Phytocyanin | 31 | 149 | - | - | |
Sed01g3239 | 238 | MobiDBLite | consensus disorder prediction | 150 | 208 | - | - | |
Sed01g3239 | 238 | PANTHER | BLUE COPPER PROTEIN | 14 | 165 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) | |
Sed01g3239 | 238 | FunFam | Early nodulin-like protein 18 | 30 | 152 | - | - | |
Sed01g3239 | 238 | Gene3D | - | 30 | 154 | IPR008972 | - | |
Sed01g3239 | 238 | SUPERFAMILY | Cupredoxins | 31 | 150 | IPR008972 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3239 | Sed-Chr1:59985855 | Sed09g0106 | Sed-Chr9:805897 | 3.70E-29 | dispersed | |
Sed01g3239 | Sed-Chr1:59985855 | Sed09g1489 | Sed-Chr9:38626289 | 1.60E-08 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3239 | - | - | - | 0.0 |