Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3239 ATGGAACAGAGAAAGTACAGAGCCGATGTGTCGTTACTTGTCGTTCTCATTTTCTTCTCCCTCTCCGGCCGATCTGTCGTTCGTGCCTACAAGAACTACACCGTCGGCGATTCCCTCGGCTGGTTCGACAATTTGGAAAAACCGGCCGTCGATTACCAAAATTGGACCGTGGGAAAAACCTTCTCCCTCGGCGATTTTCTAATATTTAACACGGACAACAATCACTCGGTTGTGCAAACATTCAACTTCACAACATACAAGCTCTGTGACTACGACGATGCATCGGAAAAGGACACGACGGAATGGTCCGCTGCCGACCCATCAGCGACGACTACGTATGCTGTGACGGTGCCTGTGCAACTAGAGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTATGATGGAGAACAGTGTCAAAATGGGCAACAATTCATGATAAACGTGACTCATGGACAGGGCCTTCCAAAAAGCTCGGGAGACTCTTCCAATGGAGCTTCGGCTCCGGAAGCTCCCGACTCCGGGGACGAAACGGAGGCCGCACCCGACACCATTGTCCCTTCCAGCTTCGACAATCCCAAAAACGACGTCGCTGATAATGCAGATAGCGACAAGAAGGAAGCTAATTCAGGCTCCGTTTCGCTTCGCTTCAAGTTTAATAATGAGTTTTTCTTCTTGTTAGTTGGTTCTGCATGCATGTTTCTTTTTACTGAGTAA 717 48.68 MEQRKYRADVSLLVVLIFFSLSGRSVVRAYKNYTVGDSLGWFDNLEKPAVDYQNWTVGKTFSLGDFLIFNTDNNHSVVQTFNFTTYKLCDYDDASEKDTTEWSAADPSATTTYAVTVPVQLEKEGTNYFFSGNYDGEQCQNGQQFMINVTHGQGLPKSSGDSSNGASAPEAPDSGDETEAAPDTIVPSSFDNPKNDVADNADSDKKEANSGSVSLRFKFNNEFFFLLVGSACMFLFTE 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 59985855 59989270 + Sed0025886.1 Sed01g3239 702543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3239 238 MobiDBLite consensus disorder prediction 150 169 - -
Sed01g3239 238 ProSiteProfiles Phytocyanin domain profile. 31 151 IPR003245 GO:0009055(InterPro)
Sed01g3239 238 Pfam Plastocyanin-like domain 41 143 IPR003245 GO:0009055(InterPro)
Sed01g3239 238 CDD Phytocyanin 31 149 - -
Sed01g3239 238 MobiDBLite consensus disorder prediction 150 208 - -
Sed01g3239 238 PANTHER BLUE COPPER PROTEIN 14 165 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Sed01g3239 238 FunFam Early nodulin-like protein 18 30 152 - -
Sed01g3239 238 Gene3D - 30 154 IPR008972 -
Sed01g3239 238 SUPERFAMILY Cupredoxins 31 150 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3239 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3239 Sed-Chr1:59985855 Sed09g0106 Sed-Chr9:805897 3.70E-29 dispersed
Sed01g3239 Sed-Chr1:59985855 Sed09g1489 Sed-Chr9:38626289 1.60E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g2159 . 12 156 Phytocyanin Superfamily AT1G48940 52.0 1.2e-37 154.1
Sed11g1139 . 11 171 Phytocyanin Superfamily AT2G25060 52.1 8.5e-42 167.9
Sed07g2613 . 28 182 Phytocyanin Superfamily AT5G15350 52.9 3.5e-45 179.1
Sed11g1139 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 1.5e-43 173.7
Sed08g2159 . 20 128 Phytocyanin Superfamily AT3G18590 64.5 1.9e-36 150.2
Sed08g2159 . 20 128 Phytocyanin Superfamily AT3G18590 64.5 1.9e-36 150.2
Sed08g2159 . 12 156 Phytocyanin Superfamily AT1G48940 52.0 1.2e-37 154.1
Sed11g1139 . 10 170 Phytocyanin Superfamily AT5G25090 54.2 1.2e-40 164.1
Sed11g1139 . 11 171 Phytocyanin Superfamily AT2G25060 52.1 8.5e-42 167.9
Sed11g1139 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 1.5e-43 173.7
Sed07g2613 . 28 182 Phytocyanin Superfamily AT5G15350 52.9 3.5e-45 179.1
Sed01g3239 . 9 229 Phytocyanin Superfamily AT1G08500 57.2 3.9e-60 229.2
Sed08g1028 . 32 138 Phytocyanin Superfamily AT2G27035 57.0 3.3e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26