Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g3255 | ATGTCTTCTTCTGGAATCTCTACCTTGTCGGATGCCGTTCAAGAACTCCAAGTTTGTGACCAGAAGAAGGTAGAGATTCAAGGAACAGGGCATGAGAGTCATGATGGGGCTTGTGCTATTTGCTTAAACAAGATAGCTCTTCAAGAAACTGCCTTAGTGAGAGGTTGCGAGCACGCCTATTGTGTGACTTGCATCCTTCGATGGGCTTCGTACAACAAACAACCAACTTGTCCCCAATGTAAACTTCCCTTTGAGTTCCTCATTGTACATCGATCTCTTGATGGGAGCATACATGACTATATGTTTGAGGAGAGTGTGTGTTTACTTCTAAGAGCTTCATGGTATCTACCACTCATTGTTGAGGATCGTGAGGAAACATATTCTTATGATCGTGAGGAGTACTATCCCTATGATGATGACGATGAAGGATTTGAAGAAGCGTACTTGGGTGCATCAAGCCTTCGTATTGGAAATCGAAGGTGGGGAGACAATGGATTTGTGAGGTCTGGGCGACAAGAAGCACGACCAGTTGTTAGACCAACTGTTCTAGATTTTGGAGGAGCTAGTTCGTCGTGCGAGCCTGTAAAAAAAGATCTTTTCAAGGATAAAACAGGCCGACGAGCTAAAAGAGCCTTAAAACGAGAGGCTGCCAATAAAGCTGCAGCAGCTAAACATGAGGAACACTTGGCCAGGTTTGGCAGAAAGTAA | 708 | 44.49 | MSSSGISTLSDAVQELQVCDQKKVEIQGTGHESHDGACAICLNKIALQETALVRGCEHAYCVTCILRWASYNKQPTCPQCKLPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYLPLIVEDREETYSYDREEYYPYDDDDEGFEEAYLGASSLRIGNRRWGDNGFVRSGRQEARPVVRPTVLDFGGASSSCEPVKKDLFKDKTGRRAKRALKREAANKAAAAKHEEHLARFGRK | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 60517512 | 60520309 | - | Sed0020433.1 | Sed01g3255 | 702559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g3255 | 235 | ProSitePatterns | Zinc finger RING-type signature. | 56 | 65 | IPR017907 | - | |
Sed01g3255 | 235 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 8 | 235 | - | - | |
Sed01g3255 | 235 | SUPERFAMILY | RING/U-box | 32 | 88 | - | - | |
Sed01g3255 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 38 | 81 | IPR001841 | - | |
Sed01g3255 | 235 | SMART | ring_2 | 38 | 80 | IPR001841 | - | |
Sed01g3255 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 86 | IPR013083 | - | |
Sed01g3255 | 235 | Pfam | Ring finger domain | 37 | 81 | IPR001841 | - | |
Sed01g3255 | 235 | MobiDBLite | consensus disorder prediction | 215 | 235 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3254 | Sed-Chr1:60514096 | Sed01g3255 | Sed-Chr1:60517512 | 3.80E-22 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g3255 | - | - | - | 0.0 |