Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3255 ATGTCTTCTTCTGGAATCTCTACCTTGTCGGATGCCGTTCAAGAACTCCAAGTTTGTGACCAGAAGAAGGTAGAGATTCAAGGAACAGGGCATGAGAGTCATGATGGGGCTTGTGCTATTTGCTTAAACAAGATAGCTCTTCAAGAAACTGCCTTAGTGAGAGGTTGCGAGCACGCCTATTGTGTGACTTGCATCCTTCGATGGGCTTCGTACAACAAACAACCAACTTGTCCCCAATGTAAACTTCCCTTTGAGTTCCTCATTGTACATCGATCTCTTGATGGGAGCATACATGACTATATGTTTGAGGAGAGTGTGTGTTTACTTCTAAGAGCTTCATGGTATCTACCACTCATTGTTGAGGATCGTGAGGAAACATATTCTTATGATCGTGAGGAGTACTATCCCTATGATGATGACGATGAAGGATTTGAAGAAGCGTACTTGGGTGCATCAAGCCTTCGTATTGGAAATCGAAGGTGGGGAGACAATGGATTTGTGAGGTCTGGGCGACAAGAAGCACGACCAGTTGTTAGACCAACTGTTCTAGATTTTGGAGGAGCTAGTTCGTCGTGCGAGCCTGTAAAAAAAGATCTTTTCAAGGATAAAACAGGCCGACGAGCTAAAAGAGCCTTAAAACGAGAGGCTGCCAATAAAGCTGCAGCAGCTAAACATGAGGAACACTTGGCCAGGTTTGGCAGAAAGTAA 708 44.49 MSSSGISTLSDAVQELQVCDQKKVEIQGTGHESHDGACAICLNKIALQETALVRGCEHAYCVTCILRWASYNKQPTCPQCKLPFEFLIVHRSLDGSIHDYMFEESVCLLLRASWYLPLIVEDREETYSYDREEYYPYDDDDEGFEEAYLGASSLRIGNRRWGDNGFVRSGRQEARPVVRPTVLDFGGASSSCEPVKKDLFKDKTGRRAKRALKREAANKAAAAKHEEHLARFGRK 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 60517512 60520309 - Sed0020433.1 Sed01g3255 702559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3255 235 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Sed01g3255 235 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 235 - -
Sed01g3255 235 SUPERFAMILY RING/U-box 32 88 - -
Sed01g3255 235 ProSiteProfiles Zinc finger RING-type profile. 38 81 IPR001841 -
Sed01g3255 235 SMART ring_2 38 80 IPR001841 -
Sed01g3255 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 86 IPR013083 -
Sed01g3255 235 Pfam Ring finger domain 37 81 IPR001841 -
Sed01g3255 235 MobiDBLite consensus disorder prediction 215 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3254 Sed-Chr1:60514096 Sed01g3255 Sed-Chr1:60517512 3.80E-22 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3255 - - - 0.0