Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3257 ATGCTCGGCCTCCGCGACGTTCTCCTCGTCGCTCCTAATCTCATCTCCGATCACGACGATCACAACCTGTTGAGCCATCGGACCAACAGAGGCGGCGCTGGGATCCACCTCTGGCAGAACAATCAGAGAACGCCGCCGTCGTCTTCTCTCCCCAACGCCGCTGTCACCGACGGTGGGATCGGCGGCGCGGCGACGGCCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGCAGCCATAGGAGATGCAGGACCTGCTGCCGGAGCCGAGGCTTTGATTGCTCGACTCACGTGAAGAGCACGTGGGTCCCTGCTTCGCGGCGGCGAGAGCGCCAGCTCATGGCGGTCGCCGCCGTGGGTTCGGCCGGATCCTCCTCCGGTGTTAAGAAACCGCGACTTGTTGCTTCTCAAACCACTTCTCACACTTCCACTTCCAATACAACTCCGCCTAGAAGCCTTGATACCAGCTCCAGTCTCCAAGATGCTACATTTAGAGACACATTACCAGGGCAACTGCGAGCACCTGCGGTGTTCAAATGCGTGAGAGTAACAGCGGTGGACGACGGTGGCGACGAGTTCGCCTATCAAGCAGTGGTCAAAATTGGGGGACATGTTTTCAAAGGGTTATTACACGACCAGGGCATCGAATCCGAAGATCAGTTCCCGAATGTATCGGAATTGCATTTGGGCGATGGCGGCAGCGGTGGTGGTGGTAGAACCATTAGAAATGGTGGTTCTACTTCTTCTCCACTTGTTGATCCGTCTGATGTTTATGATGTGGCCGCCTCCGGCGTCGGTTTGCCGGGTTTTCTCGGTGGTTCGAATTATGGCTGCTGA 840 57.14 MLGLRDVLLVAPNLISDHDDHNLLSHRTNRGGAGIHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGC 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 60588573 60591182 - Sed0003066.1 Sed01g3257 702561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3257 279 MobiDBLite consensus disorder prediction 231 254 - -
Sed01g3257 279 MobiDBLite consensus disorder prediction 121 159 - -
Sed01g3257 279 MobiDBLite consensus disorder prediction 131 159 - -
Sed01g3257 279 NCBIfam putative zinc finger domain, LRP1 type 67 109 IPR006510 -
Sed01g3257 279 Pfam Domain of unknown function (DUF702) 65 217 - -
Sed01g3257 279 NCBIfam LRP1 C-terminal domain 169 216 IPR006511 -
Sed01g3257 279 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 41 260 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3257 Sed-Chr1:60588573 Sed05g1176 Sed-Chr5:15775658 1.50E-93 dispersed
Sed01g3257 Sed-Chr1:60588573 Sed01g3258 Sed-Chr1:60589785 6.40E-158 tandem
Sed08g1127 Sed-Chr8:21766981 Sed01g3257 Sed-Chr1:60588573 6.10E-64 transposed
Sed01g3257 Sed-Chr1:60588573 Sed05g1175 Sed-Chr5:15775658 8.50E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37363 PF05142 DUF702 2.80E-59 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3257 K27807 - csv:101207487 314.694