Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g3258 | ATGCTCGGCCTCCGCGACGTTCTCCTCGTCGCTCCTAATCTCATCTCCGATCACGACGATCACAACCTGTTGAGCCATCGGACCAACAGAGGCGGCGCTGGGATCCACCTCTGGCAGAACAATCAGAGAACGCCGCCGTCGTCTTCTCTCCCCAACGCCGCTGTCACCGACGGTGGGATCGGCGGCGCGGCGACGGCCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGCAGCCATAGGAGATGCAGGACCTGCTGCCGGAGCCGAGGCTTTGATTGCTCGACTCACGTGAAGAGCACGTGGGTCCCTGCTTCGCGGCGGCGAGAGCGCCAGCTCATGGCGGTCGCCGCCGTGGGTTCGGCCGGATCCTCCTCCGGTGTTAAGAAACCGCGACTTGTTGCTTCTCAAACCACTTCTCACACTTCCACTTCCAATACAACTCCGCCTAGAAGCCTTGATACCAGCTCCAGTCTCCAAGATGCTACATTTAGAGACACATTACCAGGGCAACTGCGAGCACCTGCGGTGTTCAAATGCGTGAGAGTAACAGCGGTGGACGACGGTGGCGACGAGTTCGCCTATCAAGCAGTGGTCAAAATTGGGGGACATGTTTTCAAAGGGTTATTACACGACCAGGGCATCGAATCCGAAGATCAGTTCCCGAATGTATCGGAATTGCATTTGGGCGATGGCGGCAGCGGTGGTGGTGGTAGAACCATTAGAAATGGTGGTTCTACTTCTTCTCCACTTGTTGATCCGTCTGATGTTTATGATGTGGCCGCCTCCGGCGTCGGTTTGCCGGGTTTTCTCGGTGGTTCGAATTATGGTAATCAAATCAGCTAA | 849 | 56.54 | MLGLRDVLLVAPNLISDHDDHNLLSHRTNRGGAGIHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS | 282 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 60589785 | 60591909 | - | Sed0003066.2 | Sed01g3258 | 702562 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g3258 | 282 | MobiDBLite | consensus disorder prediction | 231 | 254 | - | - | |
| Sed01g3258 | 282 | MobiDBLite | consensus disorder prediction | 121 | 159 | - | - | |
| Sed01g3258 | 282 | MobiDBLite | consensus disorder prediction | 131 | 159 | - | - | |
| Sed01g3258 | 282 | NCBIfam | LRP1 C-terminal domain | 169 | 216 | IPR006511 | - | |
| Sed01g3258 | 282 | Pfam | Domain of unknown function (DUF702) | 65 | 217 | - | - | |
| Sed01g3258 | 282 | NCBIfam | putative zinc finger domain, LRP1 type | 67 | 109 | IPR006510 | - | |
| Sed01g3258 | 282 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 41 | 260 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g3258 | Sed-Chr1:60589785 | Sed05g1176 | Sed-Chr5:15775658 | 3.00E-94 | dispersed | |
| Sed01g3257 | Sed-Chr1:60588573 | Sed01g3258 | Sed-Chr1:60589785 | 6.40E-158 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 37364 | PF05142 | DUF702 | 2.90E-59 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g3258 | K27807 | - | csv:101207487 | 322.013 |