Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3258 ATGCTCGGCCTCCGCGACGTTCTCCTCGTCGCTCCTAATCTCATCTCCGATCACGACGATCACAACCTGTTGAGCCATCGGACCAACAGAGGCGGCGCTGGGATCCACCTCTGGCAGAACAATCAGAGAACGCCGCCGTCGTCTTCTCTCCCCAACGCCGCTGTCACCGACGGTGGGATCGGCGGCGCGGCGACGGCCACGTGCCAGGACTGTGGGAACCAGGCGAAGAAGGATTGCAGCCATAGGAGATGCAGGACCTGCTGCCGGAGCCGAGGCTTTGATTGCTCGACTCACGTGAAGAGCACGTGGGTCCCTGCTTCGCGGCGGCGAGAGCGCCAGCTCATGGCGGTCGCCGCCGTGGGTTCGGCCGGATCCTCCTCCGGTGTTAAGAAACCGCGACTTGTTGCTTCTCAAACCACTTCTCACACTTCCACTTCCAATACAACTCCGCCTAGAAGCCTTGATACCAGCTCCAGTCTCCAAGATGCTACATTTAGAGACACATTACCAGGGCAACTGCGAGCACCTGCGGTGTTCAAATGCGTGAGAGTAACAGCGGTGGACGACGGTGGCGACGAGTTCGCCTATCAAGCAGTGGTCAAAATTGGGGGACATGTTTTCAAAGGGTTATTACACGACCAGGGCATCGAATCCGAAGATCAGTTCCCGAATGTATCGGAATTGCATTTGGGCGATGGCGGCAGCGGTGGTGGTGGTAGAACCATTAGAAATGGTGGTTCTACTTCTTCTCCACTTGTTGATCCGTCTGATGTTTATGATGTGGCCGCCTCCGGCGTCGGTTTGCCGGGTTTTCTCGGTGGTTCGAATTATGGTAATCAAATCAGCTAA 849 56.54 MLGLRDVLLVAPNLISDHDDHNLLSHRTNRGGAGIHLWQNNQRTPPSSSLPNAAVTDGGIGGAATATCQDCGNQAKKDCSHRRCRTCCRSRGFDCSTHVKSTWVPASRRRERQLMAVAAVGSAGSSSGVKKPRLVASQTTSHTSTSNTTPPRSLDTSSSLQDATFRDTLPGQLRAPAVFKCVRVTAVDDGGDEFAYQAVVKIGGHVFKGLLHDQGIESEDQFPNVSELHLGDGGSGGGGRTIRNGGSTSSPLVDPSDVYDVAASGVGLPGFLGGSNYGNQIS 282
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 60589785 60591909 - Sed0003066.2 Sed01g3258 702562
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3258 282 MobiDBLite consensus disorder prediction 231 254 - -
Sed01g3258 282 MobiDBLite consensus disorder prediction 121 159 - -
Sed01g3258 282 MobiDBLite consensus disorder prediction 131 159 - -
Sed01g3258 282 NCBIfam LRP1 C-terminal domain 169 216 IPR006511 -
Sed01g3258 282 Pfam Domain of unknown function (DUF702) 65 217 - -
Sed01g3258 282 NCBIfam putative zinc finger domain, LRP1 type 67 109 IPR006510 -
Sed01g3258 282 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 41 260 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3258 Sed-Chr1:60589785 Sed05g1176 Sed-Chr5:15775658 3.00E-94 dispersed
Sed01g3257 Sed-Chr1:60588573 Sed01g3258 Sed-Chr1:60589785 6.40E-158 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37364 PF05142 DUF702 2.90E-59 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3258 K27807 - csv:101207487 322.013