Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3262 ATGGCGCACAAAAATTTTCCCATCTTGTTTTCCTTCGTGGCTGTTCTTTCAGCCGCCATTTTCAGCGCAGCAAATGGATCAGAAAGAAAAGACCATATTGTGTACATGGGGTCCATAAAAAACAGAGCAGTAGCAAAACCAACTCACCATTTGAACCTTCTTCAATCCGTAATTGGACTTTCAACCAATGCAGAAAGCTCATACATTCGTAGCTATGGAAGAAGCTTCAATGGCTTCGCTGCAAAACTCACGAACGCCGAAACAGAGCAACTCGCAGCCATGGAAGGGGTGGTCTCTGTTTTCGAAAGCAAGAAACTCAAAACGCAAACGACAAGATCGTGGGACTTTCTGGGGTTCGGCAAAAACACCAAGAGAAACCCCGCCGGTGAAAACGACGTCATAATCGGGTCAATCGACACGGGAATTTGGCCGGAATCGGAGAGCTTCAACGGGTCCGGGTTTCCGCCGGCGCCGGCGGGGTGGAAAGGGGTGTGTGCAGGGGGAGTGAATTTCACGTGCAACAACAAGGTGATCGGAGCTCGTTACTACTCCGCCGCGTCGGCGAGGGACAACGTCGGCCACGGCACTCACACGGCCTCCACGGCGGCCGGGAACTCGGTGGAAACGGCCGGGTTTTATGGGATTGGCGGTGGAGTTGCCAGAGGAGGAGTCCCGTCGTCGAGAATTGCGGTATACAAAGTGTGCGATCCGGATTGCTCGGAAGTGGATATTATGGCGGCGTTTGACGACGCCATTGCCGACGGTGTGGACATTATAACAATTTCGATCGGCGGGCTCGGAGCGGCTGAATTAACGACGGATTCGATTGCAATTGGGTCCTTTCACGCTTTGGGGAGAGGAATCCTGACCGTTCAATCCGCCGGAAATGATGGGCCGGATGAAGAATCGGTCGGAAGTGTAGCTCCGTGGATACTTACCGTCGGAGCCACCACTACGGATAGATCCATTGTAGACCAGGTTGTCCTCGACAATGGAAAGACCGTGACGGGCTATACCGTGAATTCCTTTTCTTCAAACAACAACATTTCACTCATTTATGGATCAAAAGTTTCCAAAAATTGTTCCTTCGAAGATTCACAACACTGTATGAAAGGTTGCTTGGATCCAGACTTGGTCAAAGCAAAGATCGTTCTCTGCCGCTTCTACGGCGGCGCTTCCGAAGCTTATAACTCCGGCGCCGCCGGAGCAATCGTATACAACAACAATTTCGAAAACGTTTCCTTCGTTTCCCCATTTCCGGCCGCCGCCTTGCCCTGGGATGATTTCGTCGCCGTTGCAAATTACTCAGCCTCTGTTGAAAATCCCCATGTCACAATCCTCAAAAGCGCCGCCGTTAACGACGCTTTTGCTCCGGTGGCGGCCGAGTTCTCCAGCCGCGGCCCAAACCCATTACTGCCGGAGATCTTGAAGCCCGATGTCGCCGCCCCCGGCGTCGAAATCCTCGCCGCGTTTTCCCCCATTGTGTCCCCTTCCAACATTCTAACCGACAAGAGATCTGTTAATTACTCTGTTATTTCCGGCACTTCCATGTCCTGTCCCCACGTCGCCGGCGTTGCCGCTTACGTCAAGAGCTTCCACCCCGATTGGTCGCCGGCGATGATTAAATCAGCTGTCATGACGACGGCGAAGCCCATTTCGAACACGGACGGGTCTCAGATTGGGGAGTTTTTACACGGGTCGGGTCTGATCAACCCGAAAGAAGCTGCGGAACCGGGGCTTGTATACGACATTGTTGAAGAAGATTACGTGAAATTGCTGTGTGGGAATGGGTTTGATTCGAAAACGGTGAGGGTAATTTCGGGAAACAAGAGTGCTTGTTCGAGGAGTCCGAGGGTGTTTCCGGCGAGAGATTTGAATTACCCGGCGATGATGGGTCGGGTTTCGCCGATGAAGGCGTTTGTGGTGAAGTTTCAGAGAATGGTGACGAATGTTGGGGCTGTAAATTCTAGTTACCGGTCGGAGATTTTGCCGATCTCTGAATTTCGTGTTGAGAAGTCGCCGGAAAAAGTTGAGGTAAGCGTTGAGCCGCCGGAACTAAGGTTTATGGATTTGAATGAGAAGAAGAGTTTTGTTGTTACGGTGGTCGGAGGGGAAATTCCGCCGGAGACTGTTTTTTCATCGGCGTTGGTTTGGAGTGATGGAATTCATAATGTTAGAAGTTCGATTGTTGTGAACGTTAAATAA 2205 51.34 MAHKNFPILFSFVAVLSAAIFSAANGSERKDHIVYMGSIKNRAVAKPTHHLNLLQSVIGLSTNAESSYIRSYGRSFNGFAAKLTNAETEQLAAMEGVVSVFESKKLKTQTTRSWDFLGFGKNTKRNPAGENDVIIGSIDTGIWPESESFNGSGFPPAPAGWKGVCAGGVNFTCNNKVIGARYYSAASARDNVGHGTHTASTAAGNSVETAGFYGIGGGVARGGVPSSRIAVYKVCDPDCSEVDIMAAFDDAIADGVDIITISIGGLGAAELTTDSIAIGSFHALGRGILTVQSAGNDGPDEESVGSVAPWILTVGATTTDRSIVDQVVLDNGKTVTGYTVNSFSSNNNISLIYGSKVSKNCSFEDSQHCMKGCLDPDLVKAKIVLCRFYGGASEAYNSGAAGAIVYNNNFENVSFVSPFPAAALPWDDFVAVANYSASVENPHVTILKSAAVNDAFAPVAAEFSSRGPNPLLPEILKPDVAAPGVEILAAFSPIVSPSNILTDKRSVNYSVISGTSMSCPHVAGVAAYVKSFHPDWSPAMIKSAVMTTAKPISNTDGSQIGEFLHGSGLINPKEAAEPGLVYDIVEEDYVKLLCGNGFDSKTVRVISGNKSACSRSPRVFPARDLNYPAMMGRVSPMKAFVVKFQRMVTNVGAVNSSYRSEILPISEFRVEKSPEKVEVSVEPPELRFMDLNEKKSFVVTVVGGEIPPETVFSSALVWSDGIHNVRSSIVVNVK 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 60756432 60761196 + Sed0018116.1 Sed01g3262 702566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3262 734 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 729 IPR045051 -
Sed01g3262 734 Gene3D - 320 453 - -
Sed01g3262 734 CDD Peptidases_S8_3 106 549 IPR034197 -
Sed01g3262 734 Gene3D Peptidase S8/S53 domain 132 589 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed01g3262 734 PRINTS Subtilisin serine protease family (S8) signature 513 529 IPR015500 -
Sed01g3262 734 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Sed01g3262 734 PRINTS Subtilisin serine protease family (S8) signature 190 203 IPR015500 -
Sed01g3262 734 SUPERFAMILY Subtilisin-like 127 577 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed01g3262 734 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 108 IPR037045 -
Sed01g3262 734 Pfam Peptidase inhibitor I9 32 108 IPR010259 -
Sed01g3262 734 Gene3D - 593 733 - -
Sed01g3262 734 Pfam Fibronectin type-III domain 624 731 IPR041469 -
Sed01g3262 734 ProSitePatterns Serine proteases, subtilase family, serine active site. 514 524 IPR023828 -
Sed01g3262 734 Pfam Subtilase family 131 555 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed01g3262 734 ProSiteProfiles Serine proteases, subtilase domain profile. 113 576 - -
Sed01g3262 734 Pfam PA domain 369 411 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3262 Sed-Chr1:60756432 Sed06g1980 Sed-Chr6:43922152 1.20E-166 dispersed
Sed01g3262 Sed-Chr1:60756432 Sed09g0258 Sed-Chr9:2064825 1.40E-167 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3262 - - - 0.0