Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3275 ATGCAGTCGAAGTCAAAAAGTGTGAATCAACTTGAATCTGAACCATCAAATATACAGCAGACTGGTAGTTACTCTGAACCTTGGTGGCGTAGAAATGCGTCCAATTCACCATCACTGGAATGCATTAATGGTGCTTCGGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTGCATGAAGATGACAATGACGACAACACGAAAGACTCACAGGCTGCAAGTTATGGGCAAGGACTGCACAGCAATCAGCTTGCTGTTTCTACAGCACCTACCGTGCATGGTGGACTTATCACACAACCTCCTCAGATTGAACTTGTAGGTCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTAGACTGATGGCTGCCTATGGGCTCAACCTATGGTATGGTTATCCACCTTTCCTTGGGATGCCACATGCAAGAATGGCTTTGCCCCTAGAGGTGACGCAGGAGCCAGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAAGCGAAGACAAGCGCGTGCTAAAGCTGAGGTTGAGAACAAACGGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGACACCAGCATGCCATGAGGAGGGCGAGGGGTAATGGTGGACGTTTTGCCAAGAAAAATGAAATGAACTCTTCAAGCTCTACCATGAAGAACAAGAAATCTGGTTCTGGTCAAGCTATGTCGTTGCTGTTGGGTAGTTGGTCTGGTTCCGAAGCTGTGCCTGGTGCCTTGGCTGAAACATGGAACTCCCCCAATGGTCAAGAAGAAACAATGGACTCCCCCAATGGTCAAGAAGAAACAATGGGCCAGTTGCATGAGACATATGAAGCTCGTAGTTATGCGAAGGGAAATAGCCATTTCCATAATTACAGTAGCTTCCAAGCTTCATCATATGCTTCTCGCTCGGGTGAGAGAGGTGAAGATGAAGACTGTTCGGTACAGCAACGAGGAAGTATCTTAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAATTGA 1029 45.38 MQSKSKSVNQLESEPSNIQQTGSYSEPWWRRNASNSPSLECINGASESNDGQSMSNDDLHEDDNDDNTKDSQAASYGQGLHSNQLAVSTAPTVHGGLITQPPQIELVGHSIACASNPYQDPYYARLMAAYGLNLWYGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILKRRQARAKAEVENKRIKVRKPYLHESRHQHAMRRARGNGGRFAKKNEMNSSSSTMKNKKSGSGQAMSLLLGSWSGSEAVPGALAETWNSPNGQEETMDSPNGQEETMGQLHETYEARSYAKGNSHFHNYSSFQASSYASRSGERGEDEDCSVQQRGSILENQAAQRRLAIN 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61038883 61041884 - Sed0020104.1 Sed01g3275 702579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3275 342 PRINTS CCAAT-binding transcription factor subunit B signature 159 181 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 PRINTS CCAAT-binding transcription factor subunit B signature 190 213 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 MobiDBLite consensus disorder prediction 1 53 - -
Sed01g3275 342 SMART cbf3 155 216 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 158 213 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 MobiDBLite consensus disorder prediction 196 210 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 1 75 - -
Sed01g3275 342 ProSiteProfiles NF-YA/HAP2 family profile. 156 216 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 MobiDBLite consensus disorder prediction 196 234 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 257 276 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 254 276 - -
Sed01g3275 342 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 275 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed01g3275 342 ProSitePatterns NF-YA/HAP2 subunit signature. 161 181 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed01g3275 342 Gene3D - 156 218 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 215 234 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 305 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3275 Sed-Chr1:61038883 Sed05g1149 Sed-Chr5:12159514 9.70E-116 dispersed
Sed01g3275 Sed-Chr1:61038883 Sed01g3289 Sed-Chr1:61191012 3.10E-146 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37369 PF02045 CBFB_NFYA 1.00E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3275 K08064 - csv:101212961 478.404