Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3275 ATGCAGTCGAAGTCAAAAAGTGTGAATCAACTTGAATCTGAACCATCAAATATACAGCAGACTGGTAGTTACTCTGAACCTTGGTGGCGTAGAAATGCGTCCAATTCACCATCACTGGAATGCATTAATGGTGCTTCGGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTGCATGAAGATGACAATGACGACAACACGAAAGACTCACAGGCTGCAAGTTATGGGCAAGGACTGCACAGCAATCAGCTTGCTGTTTCTACAGCACCTACCGTGCATGGTGGACTTATCACACAACCTCCTCAGATTGAACTTGTAGGTCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTAGACTGATGGCTGCCTATGGGCTCAACCTATGGTATGGTTATCCACCTTTCCTTGGGATGCCACATGCAAGAATGGCTTTGCCCCTAGAGGTGACGCAGGAGCCAGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAAGCGAAGACAAGCGCGTGCTAAAGCTGAGGTTGAGAACAAACGGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGACACCAGCATGCCATGAGGAGGGCGAGGGGTAATGGTGGACGTTTTGCCAAGAAAAATGAAATGAACTCTTCAAGCTCTACCATGAAGAACAAGAAATCTGGTTCTGGTCAAGCTATGTCGTTGCTGTTGGGTAGTTGGTCTGGTTCCGAAGCTGTGCCTGGTGCCTTGGCTGAAACATGGAACTCCCCCAATGGTCAAGAAGAAACAATGGACTCCCCCAATGGTCAAGAAGAAACAATGGGCCAGTTGCATGAGACATATGAAGCTCGTAGTTATGCGAAGGGAAATAGCCATTTCCATAATTACAGTAGCTTCCAAGCTTCATCATATGCTTCTCGCTCGGGTGAGAGAGGTGAAGATGAAGACTGTTCGGTACAGCAACGAGGAAGTATCTTAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAATTGA 1029 45.38 MQSKSKSVNQLESEPSNIQQTGSYSEPWWRRNASNSPSLECINGASESNDGQSMSNDDLHEDDNDDNTKDSQAASYGQGLHSNQLAVSTAPTVHGGLITQPPQIELVGHSIACASNPYQDPYYARLMAAYGLNLWYGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILKRRQARAKAEVENKRIKVRKPYLHESRHQHAMRRARGNGGRFAKKNEMNSSSSTMKNKKSGSGQAMSLLLGSWSGSEAVPGALAETWNSPNGQEETMDSPNGQEETMGQLHETYEARSYAKGNSHFHNYSSFQASSYASRSGERGEDEDCSVQQRGSILENQAAQRRLAIN 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61038883 61041884 - Sed0020104.1 Sed01g3275 702579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3275 342 PRINTS CCAAT-binding transcription factor subunit B signature 159 181 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 PRINTS CCAAT-binding transcription factor subunit B signature 190 213 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 MobiDBLite consensus disorder prediction 1 53 - -
Sed01g3275 342 SMART cbf3 155 216 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 158 213 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 MobiDBLite consensus disorder prediction 196 210 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 1 75 - -
Sed01g3275 342 ProSiteProfiles NF-YA/HAP2 family profile. 156 216 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3275 342 MobiDBLite consensus disorder prediction 196 234 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 257 276 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 254 276 - -
Sed01g3275 342 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 275 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed01g3275 342 ProSitePatterns NF-YA/HAP2 subunit signature. 161 181 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed01g3275 342 Gene3D - 156 218 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 215 234 - -
Sed01g3275 342 MobiDBLite consensus disorder prediction 305 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3275 K08064 - - csv:101212961 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3275 Sed-Chr1:61038883 Sed05g1149 Sed-Chr5:12159514 9.70E-116 dispersed
Sed01g3275 Sed-Chr1:61038883 Sed01g3289 Sed-Chr1:61191012 3.10E-146 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g3289 . 1 231 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.0 2.4e-56 216.9
Sed01g3275 . 1 219 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.8 6.0e-52 202.2
Sed12g1580 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 3.2e-46 183.3
Sed01g3275 . 92 232 CCAAT-HAP2 Transcription Factor Family AT3G20910 62.7 1.7e-39 161.0
Sed14g1617 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.2 1.2e-46 184.1
Sed10g0066 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
Sed10g0067 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37369 PF02045 CBFB_NFYA 1.00E-25 No_clan Sed TF