Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3285 ATGAGCAGCATAGCAGAGAAGACTGTGTGTGTGACGGGTGCCTCTGGCTACATAGCTTCTTGGATTGTTAAGTTCCTTCTCCAACGAGGTTACACCGTTCGAGCCAGTGTTCGAGATCCCGGTGATCCAAAGAAAACTGGTCATTTGGTTGCACTTGATGGAGCAAGTGAGAGACTTCATTTGTTCAAAGCCAATCTGTTAGAGGACGGTTCCTTTGATTCTGCCATTGAAGGTTGTGAAGGGGTTTTTCATACTGCTTCTCCTTTCTTTAATGCTGTTTCTGATCCTCAGGCTGAACTTCTTGATCCTGCAGTGAAAGGAACTTTGAATGTTCTGAAGTCAGTTGCAAAAGCATCAACTGTGAAGAGGGTTGTGTTGACATCTTCCATGGCTGCTGTTTCTTATACAAGCAGGCCTCAAACTCCACTTACAATTGTTGATGACACTTGGTTTTCCGATCCTCAGTTTTGCGAAGACGAGAAGCTTTGGTATGGACTGTCCAAAACTTTAGCTGAGGAAGCAGCTTGGAAGTTTGTAAGAGAGAAAGGAATTGACATGGTTACCATTAACCCTGCAATGGTTATTGGTCCATTATTGCAGCCACAGCTAAATACCAGTGCTCAAGCTATTTTGAACCTAATATCTGGAGCGCAAACATATCCGAATTCGGCATTTGGATGGGTGAATGTGAAAGATGTTGCCAATGCACACATTCAAGCCTATGAAATTCCATCAGCTCATGGAAGATACTGTTTGGTTGAGAGAGCTCTTCATGCTTCAGAAATTGTGAAGATTTTACATCATCTCTACCCTTCTCTTCAACTTCCTCATGAGTGTGCTGATGAGAAGCTATTTATACTGGCTTATCAGGTCTCAATTGAGAAAGCAAAGAGCATAGGCATTGAATTCATTCCTCTAGAGCAAAGTCTGAAGGAAACTGTTGAGAGTTTGAAGGAAAAGAAATTTACCAGCTTTTAA 978 42.23 MSSIAEKTVCVTGASGYIASWIVKFLLQRGYTVRASVRDPGDPKKTGHLVALDGASERLHLFKANLLEDGSFDSAIEGCEGVFHTASPFFNAVSDPQAELLDPAVKGTLNVLKSVAKASTVKRVVLTSSMAAVSYTSRPQTPLTIVDDTWFSDPQFCEDEKLWYGLSKTLAEEAAWKFVREKGIDMVTINPAMVIGPLLQPQLNTSAQAILNLISGAQTYPNSAFGWVNVKDVANAHIQAYEIPSAHGRYCLVERALHASEIVKILHHLYPSLQLPHECADEKLFILAYQVSIEKAKSIGIEFIPLEQSLKETVESLKEKKFTSF 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61169628 61173044 - Sed0013323.1 Sed01g3285 702589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3285 325 Gene3D - 7 325 - -
Sed01g3285 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 318 IPR036291 -
Sed01g3285 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 316 IPR050425 GO:0016616(PANTHER)
Sed01g3285 325 FunFam Dihydroflavonol reductase 6 325 - -
Sed01g3285 325 CDD FR_SDR_e 9 300 - -
Sed01g3285 325 Pfam NAD dependent epimerase/dehydratase family 9 245 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3285 Sed-Chr1:61169628 Sed06g2054 Sed-Chr6:44617769 1.30E-80 dispersed
Sed01g3285 Sed-Chr1:61169628 Sed05g1155 Sed-Chr5:12610736 5.50E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3285 - - - 0.0