Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3289 ATGCAATCGAAGTCTAAAAGTGTGAATCAACTCGAATCTGAACCGTCAAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATTCTATCTCCTCTTCAGCAGCTGGAGGAAATGTGTCCAATTCACTATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGACGATTTGAATGAAGATGACGATGATGACAACACGAAAGACTCACAGGCTGCAAGTTGTGGGCAAGGACAGCACAACAATCAGCCTGCTGTTTCTACTGCACCTACGGTGCATGGTGGATTTATCACACAACCTCCTCAGCTTGAACTAGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATTCTGGACTGATGGCTGCCTATGGGCATCAACCTATGGGTTATCCACCTTTCCTTGGGATGCCGCATGCAAGAATGGCTTTGCCCCTAGAGGTGACACAGGAGCCAGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAAGCGAAGACAAGCGCGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGACACCAGCATGCCATGAGGAGGGCGAGGGGTAATGGTGGACGTTTTGCCAAGAAAAATGAAATGAACTCTTCAAGCTCTACCATGAAGAACAAGAAATCTGGTTCTGGTCAAGCTATGTCGTTGCCGTTGGGTAGTCGGTCTGGTTCCGAAGCTGTGCCTGGTGCCTTGGCTGAAACATGGAACTCCCCCAATGGTCAAGAAGAAACAATGGGCCAGTTGCATGAGACATATGAAGCTCATAGTTATGCGAAGGGAAATAGCCATTTCCATAATTACAGTAGCTTCCAAGCTTCATCATATGCTTCTCGCTCGGGTGAGAGAGGTGAAGATGAAGACTGTTCGGTACAGCAACGAGGAAGTATCTTAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAATTGA 1035 45.51 MQSKSKSVNQLESEPSNMQQTGSYSEPWWRSIGYNSISSSAAGGNVSNSLSLECTNGASESNDGQSMSNDDLNEDDDDDNTKDSQAASCGQGQHNNQPAVSTAPTVHGGFITQPPQLELVGHSIACASNPYQDPYYSGLMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILKRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKNEMNSSSSTMKNKKSGSGQAMSLPLGSRSGSEAVPGALAETWNSPNGQEETMGQLHETYEAHSYAKGNSHFHNYSSFQASSYASRSGERGEDEDCSVQQRGSILENQAAQRRLAIN 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61191012 61197558 - Sed0016559.1 Sed01g3289 702593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3289 344 MobiDBLite consensus disorder prediction 208 222 - -
Sed01g3289 344 Gene3D - 168 230 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 40 109 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 307 330 - -
Sed01g3289 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3289 344 MobiDBLite consensus disorder prediction 208 278 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 84 109 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 1 24 - -
Sed01g3289 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 286 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed01g3289 344 MobiDBLite consensus disorder prediction 227 254 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 40 68 - -
Sed01g3289 344 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed01g3289 344 SMART cbf3 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3289 344 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3289 344 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3289 344 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3289 Sed-Chr1:61191012 Sed05g1150 Sed-Chr5:12159514 3.80E-136 dispersed
Sed01g3275 Sed-Chr1:61038883 Sed01g3289 Sed-Chr1:61191012 3.10E-146 transposed
Sed01g3289 Sed-Chr1:61191012 Sed05g1149 Sed-Chr5:12159514 3.80E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37370 PF02045 CBFB_NFYA 1.20E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3289 K08064 - csv:101212961 518.85