Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3289 ATGCAATCGAAGTCTAAAAGTGTGAATCAACTCGAATCTGAACCGTCAAATATGCAGCAGACTGGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATTCTATCTCCTCTTCAGCAGCTGGAGGAAATGTGTCCAATTCACTATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGACGATTTGAATGAAGATGACGATGATGACAACACGAAAGACTCACAGGCTGCAAGTTGTGGGCAAGGACAGCACAACAATCAGCCTGCTGTTTCTACTGCACCTACGGTGCATGGTGGATTTATCACACAACCTCCTCAGCTTGAACTAGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATTCTGGACTGATGGCTGCCTATGGGCATCAACCTATGGGTTATCCACCTTTCCTTGGGATGCCGCATGCAAGAATGGCTTTGCCCCTAGAGGTGACACAGGAGCCAGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAAGCGAAGACAAGCGCGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGACACCAGCATGCCATGAGGAGGGCGAGGGGTAATGGTGGACGTTTTGCCAAGAAAAATGAAATGAACTCTTCAAGCTCTACCATGAAGAACAAGAAATCTGGTTCTGGTCAAGCTATGTCGTTGCCGTTGGGTAGTCGGTCTGGTTCCGAAGCTGTGCCTGGTGCCTTGGCTGAAACATGGAACTCCCCCAATGGTCAAGAAGAAACAATGGGCCAGTTGCATGAGACATATGAAGCTCATAGTTATGCGAAGGGAAATAGCCATTTCCATAATTACAGTAGCTTCCAAGCTTCATCATATGCTTCTCGCTCGGGTGAGAGAGGTGAAGATGAAGACTGTTCGGTACAGCAACGAGGAAGTATCTTAGAAAATCAGGCAGCACAGAGGCGTCTTGCCATCAATTGA 1035 45.51 MQSKSKSVNQLESEPSNMQQTGSYSEPWWRSIGYNSISSSAAGGNVSNSLSLECTNGASESNDGQSMSNDDLNEDDDDDNTKDSQAASCGQGQHNNQPAVSTAPTVHGGFITQPPQLELVGHSIACASNPYQDPYYSGLMAAYGHQPMGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILKRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKNEMNSSSSTMKNKKSGSGQAMSLPLGSRSGSEAVPGALAETWNSPNGQEETMGQLHETYEAHSYAKGNSHFHNYSSFQASSYASRSGERGEDEDCSVQQRGSILENQAAQRRLAIN 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61191012 61197558 - Sed0016559.1 Sed01g3289 702593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3289 344 MobiDBLite consensus disorder prediction 208 222 - -
Sed01g3289 344 Gene3D - 168 230 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 40 109 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 307 330 - -
Sed01g3289 344 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 170 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3289 344 MobiDBLite consensus disorder prediction 208 278 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 84 109 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 1 24 - -
Sed01g3289 344 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 286 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed01g3289 344 MobiDBLite consensus disorder prediction 227 254 - -
Sed01g3289 344 MobiDBLite consensus disorder prediction 40 68 - -
Sed01g3289 344 ProSitePatterns NF-YA/HAP2 subunit signature. 173 193 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Sed01g3289 344 SMART cbf3 167 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3289 344 ProSiteProfiles NF-YA/HAP2 family profile. 168 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3289 344 PRINTS CCAAT-binding transcription factor subunit B signature 171 193 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed01g3289 344 PRINTS CCAAT-binding transcription factor subunit B signature 202 225 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3289 K08064 - - csv:101212961 518.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3289 Sed-Chr1:61191012 Sed05g1150 Sed-Chr5:12159514 3.80E-136 dispersed
Sed01g3275 Sed-Chr1:61038883 Sed01g3289 Sed-Chr1:61191012 3.10E-146 transposed
Sed01g3289 Sed-Chr1:61191012 Sed05g1149 Sed-Chr5:12159514 3.80E-136 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g3289 . 1 231 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.0 2.4e-56 216.9
Sed01g3275 . 1 219 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.8 6.0e-52 202.2
Sed12g1580 . 1 233 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.9 3.2e-46 183.3
Sed01g3275 . 92 232 CCAAT-HAP2 Transcription Factor Family AT3G20910 62.7 1.7e-39 161.0
Sed14g1617 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.2 1.2e-46 184.1
Sed10g0066 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
Sed10g0067 . 1 169 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.0 1.3e-45 180.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37370 PF02045 CBFB_NFYA 1.20E-26 No_clan Sed TF