Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3295 ATGGCCTCCTTGGCGCTGACGTCCTCACATCTCCCTTCTCTCCGCTCGCGACTCCCCAAATCTGAACCAAATCCTCGAATCCGCTGCTCCTCTCTCCGCTCGCCTCTTCCCAAAACCGCCATTTTCGGCGGCGGCCTCAGAACCAGCTTCCGCCGTCCGGCTTCTTCTCTATTCAACGAATCTAAATTCGTCAATGCCTCTTCCTTCACCGTCCGAGCGGCTTCCTCCTCTTCTCCGGCTGTTCCTGTAGCTCCGCCTTCTCAGCCATGGCAGGGTGCGGCGATTAAGCCGCTCATTGCTTCCATCGCTACAGGTATCATCCTCTGGTTTGTTCCGGTTCCGTCAGGCGTTTCTCGAAACGCCTGGCAATTGCTTGCGATTTTCCTTGCTACCATCGTCGGGATCATTACTCAGCCTTTGCCTCTTGGTGCTGTTGCTTTGATGGGACTTGGCGCTTCCGTTTTGACCAAAACCCTAACGTTCTCTGCTGCTTTCTCTGCGTTTGGTGATCCGATCCCGTGGCTCATTGCTCTCGCCTTCTTCTTCGCTCGTGGATTCATTAAGACCGGTCTCGGTAATCGAATTGCTTATCAATTTGTTTCTCTGTTTGGTAGTTCGTCCTTAGGGCTAGGGTATAGTTTAGTGTTTAGCGAGGCTCTGTTGGCGCCGGCCATTCCTTCCGTTTCGGCTAGAGCTGGAGGGATATTCCTTCCGTTGGTGAAATCGCTCTGTGTTGCTTGTGGTAGCAATGCTGGTGATGGGACGGAGAGGCGGTTGGGATCCTGGTTGATGCTTACTTGCTTTCAAACTTCGGTGATTTCGTCGTCCATGTTCTTGACGGCTATGGCTGCTAATCCTCTGAGTGCCACACTGACGCTCAACACAATTCAGCAGACGATTGGATGGACCGACTGGGCGAAAGCCGCGATTGTTCCGGGATTGATCTCGTTGATTGTGGTGCCCTTGCTTTTGTATGTTATCTATCCGCCCACGGTGAAGAGCAGTCCAGATGCACCAAAGCTTGCTAGAGAGAAGTTGGAAAAGATGGGACCAATGACCAAAAATGAGATTATAATGGCTGGAACTCTACTTCTTACGGTGGGTCTGTGGGTTTTTGGAGGGGTTCTTAATGTGGACGCTGTTACTGCTGCTATTTTGGGATTGTCCGTCCTTCTTGTAACCGGGGTTGTGACATGGAAGGAGTGCTTGGCAGAATCTGTTGCCTGGGACACTCTAACTTGGTTTGCTGCACTCATTGCAATGGCAGGGTATCTCAACAAATATGGTCTCATCTCCTGGTTCAGCCAAACTGTAGTCAAGTTCGTTGGTGGACTAGGCCTTTCATGGCAGCTTTCTTTCGGCATTTTAGTTCTTCTCTATTTCTACTCCCACTACTTCTTTGCAAGTGGAGCTGCTCACATCGGTGCCATGTTCACAGCCTTCTTATCCGTTGCTAGTGCTTTGGGGACTCCCCCATACTTTGGAGCAATAGTACTTTCCTTCTTGTCCAATCTGATGGGTGGCCTAACCCACTACGGTATCGGGTCTGCACCGGTTTTCTATGGTGCCAACTACGTTCCTCTTGCTCAATGGTGGGGCTACGGGTTCCTCATATCCATTGTCAACATCATTATCTGGCTCGGCATTGGCGGAATTTGGTGGAAGGCCATTGGTTTATGGTGA 1683 50.92 MASLALTSSHLPSLRSRLPKSEPNPRIRCSSLRSPLPKTAIFGGGLRTSFRRPASSLFNESKFVNASSFTVRAASSSSPAVPVAPPSQPWQGAAIKPLIASIATGIILWFVPVPSGVSRNAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVSLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNAGDGTERRLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTIQQTIGWTDWAKAAIVPGLISLIVVPLLLYVIYPPTVKSSPDAPKLAREKLEKMGPMTKNEIIMAGTLLLTVGLWVFGGVLNVDAVTAAILGLSVLLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYFGAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGYGFLISIVNIIIWLGIGGIWWKAIGLW 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61257053 61261987 - Sed0001047.1 Sed01g3295 702599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3295 560 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 59 560 IPR030676 GO:0005215(PANTHER)
Sed01g3295 560 MobiDBLite consensus disorder prediction 1 29 - -
Sed01g3295 560 MobiDBLite consensus disorder prediction 1 15 - -
Sed01g3295 560 CDD ArsB_NhaD_permease 132 542 - -
Sed01g3295 560 NCBIfam DASS family sodium-coupled anion symporter 112 554 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed01g3295 560 Pfam Sodium:sulfate symporter transmembrane region 97 560 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3295 Sed-Chr1:61257053 Sed07g1188 Sed-Chr7:8889269 1.10E-116 dispersed
Sed01g3295 Sed-Chr1:61257053 Sed13g0354 Sed-Chr13:2378489 5.10E-122 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3295 - - - 0.0