Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3300 ATGATCATAATGGAGAATTATGAAATGAGGGATTTAGAAGAGATGAGAGATTATTTCAAGAGTGGGAAAACAAAGGAGCCATCTTGGAGGCTTTCTCAGCTCAAAGCCTTACACCAACTTCTAGACCACAATGAACAAGAAATTTACAGTGCCCTTTTGCAAGACTTGGGAAAACACCATGTTGAAGCTTACAGAGATGAGATTGGTACTCTGGAAAAATCCCTTAACTTTGCTTTACAAAATTTGAAACAATGGATGGCTCCCAAAAAGGCGAAATTGCCAGCAATAGCGTTGCTAAGTTCAGCAGAAGTGGTTCCTCAACCTCTAGGCGTTGTTCTTATAATCTCATCGTGGAACTTCCCGTTTGGGTTATCCTTGGAGCCGTTGATAGGAGCAATAGCCGCCGGAAATTGCGTGGTTTTGAAGACGTCGGAGTTTGCTCCGGCGAGTTCAGCTTTTCTGACCAAAGCTATGGGGAAATATGTGGATAGTAAAGCCGTCAGAGTTGTGGAAGGAGGCCCGGCCGCCGGCGACCGGCTGCTTCGGCTCCGGTGGGACAAGATTTTCTTTACAGGAAGTAGACGAGTAGGGCAGGTCGTTATGGCTGCCGCCGCCAGACACCTAACGCCAGTGACTTTGGAGCTCGGCGGGAAGTGCCCCGCCATTATTGACTCGCTTTCATTTTCATGGGATATTGAGGCTACTGCCAAACGGATCGTTATCGGAAAATTTGGACTCTGCGGCGGTCAAGCTTGCGTCGCAATCGACTACGTCCTGATTGAACATAGATTTATACCCACATTGGTCGAGTTGATGAAGAAGTTCATCAAGGAATTCTTCGATGAAAGTTCGAGCCAAGCAAAAAGCCTGGCGAGAATCGTAAACACACAGAATTTCTTGAGATTGAAGAGTCTGTTGGATGAGCCTGCTGTCCAAGCTTCGATCATCTATGGAGGATCCATGGACCAACACGAATTGTTTGTTGAGCCGACTATTCTGGTGAACCCACCAAATGACGCAGAGATTATGACAGATGAAATATTCGGACCATTACTTCCCATCATTGGACTGGATAAGATTGAAGACAGTATAGATTTCATCAATTCAAGGCCTAAGCCTCTCGCCATTTATGCCTTTACAAAAGATAAAGCTTTCCAAAGGAGACTTGTCTCAGAAACTTCTTCGGGTAGCTTGACATTTAATGATGCAGTTATTCAGTATGCAGCCGATTCACTCCCATTTGGAGGGGTGGGTGAAAGTGGGATTGGAAGGTACCATGGCAAATTCTCATTCGACACGTTTAGTCATGAAAAGGCAATTCTGAAGAGGACCTTCTTGTTGGACTTCTGGTTCAGATATCCCCCTTGGAACACTCACAAGCTTCAGCTTCTTAGACATGCTTACAATCAAAACTATTTCCATTTTCTCCTCACTGTTTTGGGTCTCAAAAATTCTTAA 1458 44.86 MIIMENYEMRDLEEMRDYFKSGKTKEPSWRLSQLKALHQLLDHNEQEIYSALLQDLGKHHVEAYRDEIGTLEKSLNFALQNLKQWMAPKKAKLPAIALLSSAEVVPQPLGVVLIISSWNFPFGLSLEPLIGAIAAGNCVVLKTSEFAPASSAFLTKAMGKYVDSKAVRVVEGGPAAGDRLLRLRWDKIFFTGSRRVGQVVMAAAARHLTPVTLELGGKCPAIIDSLSFSWDIEATAKRIVIGKFGLCGGQACVAIDYVLIEHRFIPTLVELMKKFIKEFFDESSSQAKSLARIVNTQNFLRLKSLLDEPAVQASIIYGGSMDQHELFVEPTILVNPPNDAEIMTDEIFGPLLPIIGLDKIEDSIDFINSRPKPLAIYAFTKDKAFQRRLVSETSSGSLTFNDAVIQYAADSLPFGGVGESGIGRYHGKFSFDTFSHEKAILKRTFLLDFWFRYPPWNTHKLQLLRHAYNQNYFHFLLTVLGLKNS 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61338658 61345671 + Sed0014868.1 Sed01g3300 702604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3300 485 FunFam Aldehyde dehydrogenase 217 420 - -
Sed01g3300 485 PIRSF ALDH 3 480 IPR012394 GO:0006081(InterPro)
Sed01g3300 485 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 217 420 IPR016163 GO:0016620(InterPro)
Sed01g3300 485 SUPERFAMILY ALDH-like 13 457 IPR016161 GO:0016491(InterPro)
Sed01g3300 485 PANTHER ALDEHYDE DEHYDROGENASE 11 482 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
Sed01g3300 485 Coils Coil 61 81 - -
Sed01g3300 485 FunFam Aldehyde dehydrogenase 16 221 - -
Sed01g3300 485 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 16 438 IPR016162 GO:0016491(InterPro)
Sed01g3300 485 Pfam Aldehyde dehydrogenase family 14 439 IPR015590 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3300 Sed-Chr1:61338658 Sed05g1143 Sed-Chr5:11860219 1.50E-170 dispersed
Sed01g3300 Sed-Chr1:61338658 Sed01g3301 Sed-Chr1:61338658 7.40E-202 tandem
Sed01g3300 Sed-Chr1:61338658 Sed05g1142 Sed-Chr5:11860219 1.20E-239 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3300 K00128 - csv:101205263 799.275