Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3304 ATGGCTGATCATAACCCCTACTCCATGAATGGCTCTTTTGGTAATTTATGCCACCACTTCTCTTCTAACTCTAATTCTTATGATCTCTTCTCTTTTTCTTACTCTAATCATAACACTAATTCCTCAACTACCCATGAATTCTTTTCTCCTCAAGTTCTTCCCCTTTTGAGTTTAAGCCCTGCAAGACAAGATCACTCATTTTCACTCAACAACAAAAACTTGTGTAGCCCTAATTGTGATGATCAAGATGAGACTGTCACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTCCTTCTTCTAATTCTGATCTGATTTTGAGGCTTTCTTCCACTGAGATCTCTGATAATAATAGTAATAGTAATAAAGAAGATCATCATCATCATCATCACCATCATGGATTACAAGAATTAGGTGTTGTTCCTAATTGTAAGTACTCTTCTAATTCATCTTCTACTCATCATGGTGGTGGAGTTCTCAACAAGGGTCAGTATTGGATTCCAACTCCTGCTCAGATTCTCATTGGCCCTACTCAGTTTTCTTGCCCTCTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAATACAGAAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGCTAAGGCTGCCATGTTACTGCTGTGCACCAGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCACTAAAAGACTTTAGAACCCTTCAAACACATTACAAGAGAAAACATGGAACTAAGCCCTTCACTTGTAGAAAATGTGGGAAAGCATTTGCTGTGAGGGGGGATTGGAGAACCCATGAGAAGAATTGTGGCAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAAAGATCCCTTAAAGATCACATCAAAGCCTTTGGACATGGCCATGCTGCTTATGGGATTGACTCTAATCTTGATGAAGATGATGAACCTGCCTCTGAGATTGAACATGATAATGGAGATTGA 1020 40.49 MADHNPYSMNGSFGNLCHHFSSNSNSYDLFSFSYSNHNTNSSTTHEFFSPQVLPLLSLSPARQDHSFSLNNKNLCSPNCDDQDETVTVALHLGLPTPPSSNSDLILRLSSTEISDNNSNSNKEDHHHHHHHHGLQELGVVPNCKYSSNSSSTHHGGGVLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGTKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDSNLDEDDEPASEIEHDNGD 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 61376072 61379641 + Sed0014150.1 Sed01g3304 702608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3304 339 SMART c2h2final6 179 201 IPR013087 -
Sed01g3304 339 SMART c2h2final6 289 312 IPR013087 -
Sed01g3304 339 SMART c2h2final6 263 283 IPR013087 -
Sed01g3304 339 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Sed01g3304 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Sed01g3304 339 Gene3D Classic Zinc Finger 178 201 - -
Sed01g3304 339 PANTHER ZINC FINGER PROTEIN WIP2 29 336 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed01g3304 339 SUPERFAMILY beta-beta-alpha zinc fingers 244 283 IPR036236 -
Sed01g3304 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
Sed01g3304 339 MobiDBLite consensus disorder prediction 320 339 - -
Sed01g3304 339 MobiDBLite consensus disorder prediction 113 133 - -
Sed01g3304 339 Gene3D Classic Zinc Finger 241 316 - -
Sed01g3304 339 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 262 286 - -
Sed01g3304 339 FunFam Zinc finger protein WIP2 232 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3304 Sed-Chr1:61376072 Sed14g0195 Sed-Chr14:2209686 1.10E-98 dispersed
Sed12g1232 Sed-Chr12:8757416 Sed01g3304 Sed-Chr1:61376072 7.20E-98 transposed
Sed01g3304 Sed-Chr1:61376072 Sed05g1132 Sed-Chr5:11349122 5.60E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37372 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3304 - - - 0.0