Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3340 ATGTCGTTTAAAGTTGAATCTTTAGCTATTTGTATGTGTATGATGTTGGGTGTGTGTTGGGCTCAACTCAGCCCTACCTTCTACGACCAAACATGCCCTAATCTATCCGGCGTAGTCAGCGATTCTGTAAGCCAGGCGTTGCAGGGCGATGTTCGAGCCGGAGCCAAGCTCATTCGCTTCCACTTCCACGACTGCTTTGTCAATGGTTGTGATGGATCGGTTCTACTTGAGGATGCTGAGGGCATAGATAGCGAGTTAAATGCTCCCGGGAACGGGGGAATACAAGGGTTCGACATTGTCGACAACATAAAAGCTGCAGTTGAAGCTGCCTGCCCGGCGACCGTGTCTTGTGCCGATATCTTGGCCATTGCATCTCGTGAATCTTCCATCTTGACAGGAGGTCCGAGTTGGGAAGTTCAATTGGGAAGAAGAGATAGCAGAACAGCAAACAGAACAGGAGCTGAATCCAACCTCCCCAGCCCTTTTGAAACACTTGACATAATTCAAGCCAAATTCTCTGCCTTTGGCCTCAATTCAATCGATCTTGTCGCTTTATCTGGAGCGCATACATTCGGTCGATCAAGGTGCGTGTTCTTCAGCGGGCGGCTAAACAACTTCAACAACACTGGCAGCCCAGACCCTGCCATGGACCCGACATTCCGAGATGCCCTCGTCATCGCTTGTCCCACCGGCGACCAAAACAACCGCATCGCGCTCGACGTCACCACGCCCGACGTCTTTGACAATGCATACTACACCGATCTCGTCACCCGTCGCGGGCTTCTCCAGTCCGACCAAGAGCTCTTGTCCACCGAGGGCGCCGACACCATCCCCACTGTCAACCGGTTTGCATCGAGCGAGGCTGATTTCTTTGCTCAGTTCGGTCAGTCCATGATTAACATGGGTAACATTCTGCCTTTAGTTGCACCCGTTGGTGAAATTAGGGCAAATTGCAGGCGCGTTAATCCCTTGCAGACTCTTGCTGTTGTGTAA 993 51.56 MSFKVESLAICMCMMLGVCWAQLSPTFYDQTCPNLSGVVSDSVSQALQGDVRAGAKLIRFHFHDCFVNGCDGSVLLEDAEGIDSELNAPGNGGIQGFDIVDNIKAAVEAACPATVSCADILAIASRESSILTGGPSWEVQLGRRDSRTANRTGAESNLPSPFETLDIIQAKFSAFGLNSIDLVALSGAHTFGRSRCVFFSGRLNNFNNTGSPDPAMDPTFRDALVIACPTGDQNNRIALDVTTPDVFDNAYYTDLVTRRGLLQSDQELLSTEGADTIPTVNRFASSEADFFAQFGQSMINMGNILPLVAPVGEIRANCRRVNPLQTLAVV 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62162697 62164458 + Sed0007087.1 Sed01g3340 702644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3340 330 FunFam Peroxidase 26 170 - -
Sed01g3340 330 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Sed01g3340 330 Gene3D Peroxidase, domain 2 159 301 - -
Sed01g3340 330 ProSiteProfiles Plant heme peroxidase family profile. 22 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PANTHER PEROXIDASE 72-RELATED 10 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 Gene3D - 27 322 - -
Sed01g3340 330 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 FunFam Peroxidase 159 301 - -
Sed01g3340 330 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 SUPERFAMILY Heme-dependent peroxidases 22 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 Pfam Peroxidase 39 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3340 330 CDD secretory_peroxidase 22 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3340 Sed-Chr1:62162697 Sed05g1092 Sed-Chr5:10191295 6.50E-109 dispersed
Sed01g3340 Sed-Chr1:62162697 Sed01g3341 Sed-Chr1:62178812 2.20E-104 tandem
Sed05g0603 Sed-Chr5:4379712 Sed01g3340 Sed-Chr1:62162697 2.00E-110 transposed
Sed01g3340 Sed-Chr1:62162697 Sed05g1089 Sed-Chr5:10037705 1.50E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3340 K00430 - csv:101217743 531.561