Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3341 ATGACTTCTAATTTCAGACTTTTAGCCTTCTTCTGCTTTGCAGGTTTGATGACCGTAGGGTCACTGGCTCAGCTAAACCCTTCATTCTACGCCAAAACATGTCCAAATTTAGCCAAAATTGTGAATGGTGTGATTGCTCGGGCTCAGATAGCCGATCCTCGAGCTGGAGCTAAGCTCATTCGCCTCCACTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCTGTTTTGCTGGAGAATGCACCTGGCATAGACAGTGAACTTGATGCCCCTGGAAATCAGGGCATTCAAGGTCTTAACATCGTCGACGACATCAAATCCGCTGTCGAAAAGGCTTGCCCTCGAACTGTGTCCTGCGCCGACATCTTAACCATTGCTTCTAAAGAATCTGTAGTACTGACGGGAGGGCCGAGCTGGATCGTGCCACTGGGCCGACGAGACAGCCGAACAGCCAATAGAGATGGAGCCACAAACAACCTTGCCAGTCCCTTCGATGATCTCAATGGACTCAAAGCCAGGTTTGCTGCTTTTGGCCTCGATTCCACTGATCTTGTTTCTTTGTCAGGAGCACACATATTCGGTCGTTCAAGATGCGGATTTTTCAGCCATCCCAAAATTGTAGTAGTGAACACCAACAAGCCAGATCCAACACTAGACCCAGCATATAGACAACAGCTCCAAAGAGCTTGCTCTAGCTCGGAGACACGAGTCAATTTCGATCTGACCACCCTGGGAAAATTCGACAAAAACTTCTACACCAACCTTCAGGGGCTTCGAGGGCTTCTTCAGAGCGATCAAGAACTGTTCTCAACTCGTGGGGCTGATACCGTGGCCATTGTGAACCGTTTTGCCAGAAGCCAAGATGAGTTCTTTAAAAATTTTGGTTTGTCTATGATCAAAATGGGAAATCTTAGCCCTTTAGTTGGAAACAAGGGAGAAATTAGATTGAACTGTCGCAGTGTTAATCCATCAAGACTTGATGGTGGTCATGATGTTATGTGA 1002 47.11 MTSNFRLLAFFCFAGLMTVGSLAQLNPSFYAKTCPNLAKIVNGVIARAQIADPRAGAKLIRLHFHDCFVNGCDASVLLENAPGIDSELDAPGNQGIQGLNIVDDIKSAVEKACPRTVSCADILTIASKESVVLTGGPSWIVPLGRRDSRTANRDGATNNLASPFDDLNGLKARFAAFGLDSTDLVSLSGAHIFGRSRCGFFSHPKIVVVNTNKPDPTLDPAYRQQLQRACSSSETRVNFDLTTLGKFDKNFYTNLQGLRGLLQSDQELFSTRGADTVAIVNRFARSQDEFFKNFGLSMIKMGNLSPLVGNKGEIRLNCRSVNPSRLDGGHDVM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62178812 62185166 + Sed0004056.1 Sed01g3341 702645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3341 333 PANTHER PEROXIDASE 72-RELATED 15 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 Pfam Peroxidase 43 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 FunFam Peroxidase 28 172 - -
Sed01g3341 333 CDD secretory_peroxidase 24 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g3341 333 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed01g3341 333 Gene3D - 29 322 - -
Sed01g3341 333 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 ProSiteProfiles Plant heme peroxidase family profile. 24 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 SUPERFAMILY Heme-dependent peroxidases 24 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 Gene3D Peroxidase, domain 2 161 301 - -
Sed01g3341 333 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3341 333 FunFam Peroxidase 161 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3341 Sed-Chr1:62178812 Sed05g1092 Sed-Chr5:10191295 3.10E-111 dispersed
Sed01g3340 Sed-Chr1:62162697 Sed01g3341 Sed-Chr1:62178812 2.20E-104 tandem
Sed01g3341 Sed-Chr1:62178812 Sed01g3342 Sed-Chr1:62207704 3.10E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3341 K00430 - csv:101211507 503.056