Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3342 ATGGCTTCCCCAAAACTTTCAGCCTTTGTTGTGGTGCTAGCTTTGATGCTGGCCGGGACCTCTCACGCTCAGCTTAACCCGTTCTTCTATGCCTTCACGTGCCCTCAACTCCCTTTTATTGTTCTCGACCGGGTCTCGCGAGCTCTACTAGCCGACGATCGCGCTGCTGCTAAGCTCATTCGTCTCCACTTCCACGACTGCTTTGCTAATGGGTGCGATGGATCTGTGCTACTCGAGGACGTACCCGGCGTCATCGACAGCGAACTAAACGCTGGCGGAAACAATGGAATCCAAGGGCTTAATATTGTAGACGACATCAAAGCAGCCGTTGAAAGATCTTGCCCCGGCGTTGTTTCTTGTGCTGACATCTTAGCCCTCTCCTCTCAAATCTCTGTTGTATTGTCTGGAGGTCCAGCTTGGGTTGTTTTCTTGGGAAGAAGGGACAGCAGAGCAGCCAACAGAGCCGCAGCCGAAAATCTTCCGAGTCCATTCGAAACTCTCGATCAACTCAAAGCCAAATTCGCAGCCTTCGGGCTTGATTCGAAAGATCTCGTGACTCTATCCGGAGCACACACGTTCGGTCGATCCAGATGCCTTTTCTTCACAGGACGGTTCGACAACTTCAACAACACCGGTCTCCCAGACCCAACTCTAGACGCTGCGTACCGGGAGCAGCTTCGTGCAGCCTGCGTGACTCCGGGAACACGAGTGAACTTCGACCCGACCACACCCAACACATTCGACAAAAACTACTACACCAATCTTCAAGCCCATAAAGGGCTTCTCCAAAGTGATCAAGAGCTATTCTCCACTCCTAGAGCAGACACCATTCCAATTGTGAACAGATTTGCTGCAAGCCAGCCTTTGTTCTTTATTGAATTTGGGAATTCAATGATCAAAATGGGGAATCTTAGCCCTCCACGTGGCATCCCATCTGAAATCAGATCCAACTGTAGAAGGCTAAACCCAACCTCTGCCCATGATGTTATAAGCTCCATGTTCAACATTTGTTCACCAAAACCAAAGCCAAAAGTTTTAAAAATGGCTTCCTCTAAAATCTTAGCCTTTGCCTTTGTGGCTACTTTGATGCTAACAACTTCCCACGCGCTGCTTAGCCCTTTCTACTATGCCGCCACATGCCCTCAGCTCCCTCACATTGTTGCCGAGGTTGTCGCAAAAGCTCTAAAAACCGACGATCGAGCCGCAGCCAAACTGATTCGCCTCCATTTCCACGACTGCTTTGTTAATGGGTGTGACGGGTCGGTGCTATTGGAGGATGTACCGGGCGTGATTGACAGTGAGCTAAACGGACCTCCAAACAGTGGGATCCAAGGGCTCGACATTGTAGACAACATCAAAGCAGCAGTTGAAAGCTCATGCCCGCGCGTGGTTTCCTGCGCTGACATTTTAGCTATTTCCTCTCAAATCTCTGTTTTCTTGTCAGGAGGGCCAAGTTGGATAGCTCCATTGGGAAGAAAAGACAGCAGGATAGCCAATAGAACAGGAACCTCAAATCTCCCTGGTCCCTCGGAAACTCTAGTTGGACTTAAATCCAAATTTGCAGTTTTCGGGCTCGACTCCAAGGATCTTGTAGCTCTATCAGGAGCGCATACGTTCGGTAGAGCTAGATGCTTTTTCTTCACTGGACGCTTCGATAACTTCAACAACACTGGCAGACCCGACCCGACGCTAGACCCGACTTATCGGGAGCAGCTTCGAAGACTCTGCACAACCCCACAAACCCGAGTGAATTTCGACCCGACCACACCAACCAAATTCGACAAAGCCTACTACAACAATCTCATAAACTTGAAGGGGCTTCTCCAAAGTGACCAAGAGCTCTTCTCCACTCCCCGGGCCGATACGACTACCATTGTCAAAGCTTTTGCGGGCAACGAGGAGGCTTTCTTTAAACAGTTTGTGAAATCCATGATCAAAATGGGCAATCTCAAGCCTCCTGCTGGTGTTAGATCAGAAGTTAGATTGAATTGTAGAAGGGTCAACCCGGTTAGGGACGTTGACATTATGTAA 2031 49.38 MASPKLSAFVVVLALMLAGTSHAQLNPFFYAFTCPQLPFIVLDRVSRALLADDRAAAKLIRLHFHDCFANGCDGSVLLEDVPGVIDSELNAGGNNGIQGLNIVDDIKAAVERSCPGVVSCADILALSSQISVVLSGGPAWVVFLGRRDSRAANRAAAENLPSPFETLDQLKAKFAAFGLDSKDLVTLSGAHTFGRSRCLFFTGRFDNFNNTGLPDPTLDAAYREQLRAACVTPGTRVNFDPTTPNTFDKNYYTNLQAHKGLLQSDQELFSTPRADTIPIVNRFAASQPLFFIEFGNSMIKMGNLSPPRGIPSEIRSNCRRLNPTSAHDVISSMFNICSPKPKPKVLKMASSKILAFAFVATLMLTTSHALLSPFYYAATCPQLPHIVAEVVAKALKTDDRAAAKLIRLHFHDCFVNGCDGSVLLEDVPGVIDSELNGPPNSGIQGLDIVDNIKAAVESSCPRVVSCADILAISSQISVFLSGGPSWIAPLGRKDSRIANRTGTSNLPGPSETLVGLKSKFAVFGLDSKDLVALSGAHTFGRARCFFFTGRFDNFNNTGRPDPTLDPTYREQLRRLCTTPQTRVNFDPTTPTKFDKAYYNNLINLKGLLQSDQELFSTPRADTTTIVKAFAGNEEAFFKQFVKSMIKMGNLKPPAGVRSEVRLNCRRVNPVRDVDIM 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62207704 62222251 + Sed0021362.1 Sed01g3342 702646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3342 676 SUPERFAMILY Heme-dependent peroxidases 24 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 Gene3D - 375 668 - -
Sed01g3342 676 CDD secretory_peroxidase 24 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g3342 676 ProSiteProfiles Plant heme peroxidase family profile. 370 668 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 FunFam Peroxidase 507 647 - -
Sed01g3342 676 PRINTS Plant peroxidase signature 380 399 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Plant peroxidase signature 642 655 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Plant peroxidase signature 600 617 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Plant peroxidase signature 404 424 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Plant peroxidase signature 444 457 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Plant peroxidase signature 463 473 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Plant peroxidase signature 528 540 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Plant peroxidase signature 584 599 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Plant peroxidase signature 482 497 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Haem peroxidase superfamily signature 482 494 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Haem peroxidase superfamily signature 464 481 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Haem peroxidase superfamily signature 586 601 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Haem peroxidase superfamily signature 529 544 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 PRINTS Haem peroxidase superfamily signature 402 416 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 Pfam Peroxidase 387 631 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 Pfam Peroxidase 43 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Sed01g3342 676 SUPERFAMILY Heme-dependent peroxidases 371 669 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 Gene3D - 29 322 - -
Sed01g3342 676 ProSiteProfiles Plant heme peroxidase family profile. 24 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed01g3342 676 PANTHER PEROXIDASE 72-RELATED 359 667 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3342 676 Gene3D Peroxidase, domain 2 161 301 - -
Sed01g3342 676 Gene3D Peroxidase, domain 2 507 647 - -
Sed01g3342 676 FunFam Peroxidase 161 301 - -
Sed01g3342 676 CDD secretory_peroxidase 371 667 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g3342 676 ProSitePatterns Peroxidases active site signature. 402 413 IPR019794 GO:0004601(InterPro)
Sed01g3342 676 ProSitePatterns Peroxidases proximal heme-ligand signature. 529 539 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3342 Sed-Chr1:62207704 Sed01g3345 Sed-Chr1:62314685 5.90E-149 dispersed
Sed01g3341 Sed-Chr1:62178812 Sed01g3342 Sed-Chr1:62207704 3.10E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3342 K00430 - csv:101211752 539.65