Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3344 ATGGCTTCCCTAAACATAGCCTTCACTGTGGCGCTAGCTTTGGGGTGTGATGGCTCTGTGTTGCTCGAGCCCACACCTGGTATCGACAGGGAACTAAACGCACCTGCAAATAGTGTCATCCAAGGGCTCGACATCGTCGACAACATCAAAACAGCACTTGAAAAAGCTTGCCCGGGCGTCGTTTCCTGCGTTGATATCTTGGCCATTTCTTCTCAAATTTCTGTTTCCTTGTTTATGATTGCAGTTGGGATGGCTCCACTGGGAAGAAAAGACAGCCGGATAGCCAACAGAACCGGGACCTCAAATCTTCCCGGTCCATCAGCAACTTTGGTCGGACTTAAACAGAAATTTAGAGATCTCGGGTTTGATTCAACCGATCTTGTAGCTCTATCAGGAGCACACACGTTCGGGAAATCGAGATGCATGTTCTTCTCGGGAAGGTTCGAAAACTTCAACAACACCGGCCGACCTGACCCAACGCTAAACCCAACGTACAGGGAGCAGCTCCAAAGACTATGCACGACCCCACAAACCCGAGCGAATTTCGACCCGACCACACCAACCAAATTTGACAAAGCCTACTACAACAATCTCATAAACTTGAAGGGGCTTCTCCAAAGCGACCAGGAGCTATTCTCCACTCCCAGAGCTGATACCACTGCCATTGTTAAAGCATTCGCCGCCAATGAGCGTGCATTTTTTGACCAATTTGTGAAATCCATGATCAAAATGGGGAATCTTAAGCCTCCAAGTGGTGTTAGATTAGAAGTCAGATCTAACTGTAGAAGGGTCAATCCTTTGAGTGGTCATGATGTTATGTAA 822 47.69 MASLNIAFTVALALGCDGSVLLEPTPGIDRELNAPANSVIQGLDIVDNIKTALEKACPGVVSCVDILAISSQISVSLFMIAVGMAPLGRKDSRIANRTGTSNLPGPSATLVGLKQKFRDLGFDSTDLVALSGAHTFGKSRCMFFSGRFENFNNTGRPDPTLNPTYREQLQRLCTTPQTRANFDPTTPTKFDKAYYNNLINLKGLLQSDQELFSTPRADTTAIVKAFAANERAFFDQFVKSMIKMGNLKPPSGVRLEVRSNCRRVNPLSGHDVM 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62306476 62312796 + Sed0017510.1 Sed01g3344 702648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3344 273 Gene3D Peroxidase, domain 2 104 244 - -
Sed01g3344 273 PRINTS Haem peroxidase superfamily signature 126 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Haem peroxidase superfamily signature 61 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 Gene3D - 7 265 - -
Sed01g3344 273 CDD secretory_peroxidase 15 264 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g3344 273 PRINTS Plant peroxidase signature 181 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Plant peroxidase signature 79 94 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Plant peroxidase signature 125 137 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Plant peroxidase signature 239 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Plant peroxidase signature 41 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Plant peroxidase signature 60 70 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Plant peroxidase signature 197 214 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PRINTS Plant peroxidase signature 2 22 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 ProSitePatterns Peroxidases proximal heme-ligand signature. 126 136 IPR019793 -
Sed01g3344 273 Pfam Peroxidase 4 229 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 FunFam Peroxidase 104 244 - -
Sed01g3344 273 ProSiteProfiles Plant heme peroxidase family profile. 1 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 PANTHER PEROXIDASE 72-RELATED 14 264 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3344 273 SUPERFAMILY Heme-dependent peroxidases 4 266 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3344 Sed-Chr1:62306476 Sed05g1095 Sed-Chr5:10280518 2.20E-94 dispersed
Sed01g3344 Sed-Chr1:62306476 Sed01g3345 Sed-Chr1:62314685 2.10E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3344 K00430 - csv:101211989 403.675