Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g3345 ATGGCTTCCTCAAAGCATACAGCCTTAACTGTGGTGCTTGCTTTGATGCTCGCCGGCACCTCCCACGCTCAGCTCGACCCCTTATTTTACGCCATAACCTGTCCTGTCCTGCCTGAGATTGTACAAGGTGTGGTCTCGCAAGCTCTTCGGACCGACGACCGAGCAGGCGCCAAGCTCATCCGCTTCCATTTCCACGACTGCTTCGTCAATGGGTGTGATGGCTCTGTGCTTCTCGAGCCCGCACCGGGTATCGACAGTGAACTAAACGCACCTGCAAATAGTGGCATCCAAGGGCTCGACATCGTGGATAACATCAAAACAGCTGTTGAAAGAGCTTGCCCAGGCGTTGTTTCCTGTGCTGATATCTTAGCCCTTTCTTCTCAAATCTCTGTTTCTTTGTTGGGAGGGCCAGTTTGGATGGCTCCACTAGGAAGAAAAGACAGCCGGATAGCCAACAGAGCCGGGACCTCAAATCTTCCCGGTCCATCAGCAACTCTGGTCGGACTTAAACAGAAATTTAGAGATCTCGGGTTTGATTCAACCGATCTTGTAGCTCTATCAGGAGCGCACACGTTCGGGAAATCGAGATGCATGTTCTTCTCGGGAAGGTTCGACAACTTCAACAACACCGGCAGACCCGACCCAACGCTAAACCCAACGTACAGGGAGCAGCTCCGAAGACTATGCACAACCCCACAAACCCGAGCGAATTTCGACCCGACCACACCAACCAAATTCGACAAAGCCTACTACAACAATCTCATAAACTTGAAGGGGCTTCTCCAAAGCGACCAGGAGCTATTCTCCACTCCCAGAGCTGATACCACTGCCATTGTTAAAGCATTCGCCGCCAATGAGCGAGCATTTTTTGACCAATTTGTGAAATCCATGATCAAAATGGGGAATCTTAAGCCTCCAAGTGGTGTTACATTAGAAGTCAGATCTAACTGTAGAAGGGTCAATCCTGTGAGTGGCCATGATGTTATGTAA 990 50.2 MASSKHTALTVVLALMLAGTSHAQLDPLFYAITCPVLPEIVQGVVSQALRTDDRAGAKLIRFHFHDCFVNGCDGSVLLEPAPGIDSELNAPANSGIQGLDIVDNIKTAVERACPGVVSCADILALSSQISVSLLGGPVWMAPLGRKDSRIANRAGTSNLPGPSATLVGLKQKFRDLGFDSTDLVALSGAHTFGKSRCMFFSGRFDNFNNTGRPDPTLNPTYREQLRRLCTTPQTRANFDPTTPTKFDKAYYNNLINLKGLLQSDQELFSTPRADTTAIVKAFAANERAFFDQFVKSMIKMGNLKPPSGVTLEVRSNCRRVNPVSGHDVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 62314685 62316267 + Sed0008352.1 Sed01g3345 702649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g3345 329 Pfam Peroxidase 41 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PANTHER PEROXIDASE 72-RELATED 12 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 SUPERFAMILY Heme-dependent peroxidases 24 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 CDD secretory_peroxidase 24 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 FunFam Peroxidase 160 300 - -
Sed01g3345 329 Gene3D - 29 321 - -
Sed01g3345 329 ProSiteProfiles Plant heme peroxidase family profile. 24 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed01g3345 329 Gene3D Peroxidase, domain 2 160 300 - -
Sed01g3345 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3342 Sed-Chr1:62207704 Sed01g3345 Sed-Chr1:62314685 5.90E-149 dispersed
Sed01g3345 Sed-Chr1:62314685 Sed05g1095 Sed-Chr5:10280518 1.50E-129 dispersed
Sed01g3344 Sed-Chr1:62306476 Sed01g3345 Sed-Chr1:62314685 2.10E-137 tandem
Sed01g3345 Sed-Chr1:62314685 Sed01g3346 Sed-Chr1:62340807 1.50E-110 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g3345 K00430 - csv:101211989 509.99